Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60703g00003 ATGGGGAAGGGAACAGGGAGCTTCGGAAAGAGACGGAACAAGACTCACACTCTATGTGTGAGGTGCGGCCGCCGCAGCTTTCACCTCCAGAAGAGTCGGTGCTCCGCTTGTGCCTTCCCTGCTGCTCGTAAGAGAAAGTATAATTGGAGTGTCAAGGCTATCAGGAGAAAGACCACCGGAACCGGCAGAATGAGGTACTTGCGCCACGTCCCCCGCCGGTTCAAGACTGGCTTCAGAGAAGGCACAGAAGCTGCTCCAAGGAAGAGGGGAGCTGCTGCTACTGCTTAA 288 0.559 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAFPAARKRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKTGFREGTEAAPRKRGAAATA 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60703g00003 95 Gene3D - 1 87 IPR011331 GO:0003735|GO:0005840|GO:0006412
Stsc60703g00003 95 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Stsc60703g00003 95 PANTHER 60S RIBOSOMAL PROTEIN L37 1 93 - -
Stsc60703g00003 95 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Stsc60703g00003 95 Hamap 50S ribosomal protein L37e [rpl37e]. 2 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Stsc60703g00003 95 FunFam Ribosomal protein L37 1 88 - -
Stsc60703g00003 95 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60703g00003 Stsc-Chr60703 5191 5888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60703g00003 1 95 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 87.368 5.52e-58 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60703g00003 K02922 - csv:101221537 176.407