Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60701g00001 ATGTACTACCTTGTTTGGGAAGACTTAACTGTTGTGGTTCCAAACTTTGGGAATGGAGGACACACAAGGAGGTTGCTTAATGGCTTGAATGGGTATGCTGAACCAAACAGACTCATGGCTATTATGGGTCCTTCTGGCTCTGGAAAATCCACTCTTCTTGATTCTTTGGCAGATGTGGTTGCGTGGTACGATTCAAATCATGCTATGCTAGAATACAATAATAATGAACTTGGTAGAGTCGCTAGGAATGTTATCTTGTCTGGAAATGTGCTTTTAAATGGAAAGAAAAGAAGATTAGACTATGGTGGTGTTGCTTATGTGACACAAGAAGACATATTGTTGGGAACACTAACAGTTAGAGAAACAATATGTTACTCAGCAAATCTAAGGCTTCCATCAACAATGAGCAAAGAAGAGGTAAATGAGATTGTAGAAGGAACAATAATGGAGATGGGTCTTGAAGATTGTGGTGATAGGATCATAGGGAATTGGCATTTGAGAGGCATAAGTGGTGGAGAAAAGAAGAGACTAAGCATAGCACTTGAGATCTTAACAAGGCCTTCTCTTTTGTTTCTTGATGAACCAACCACTGGCCTTGATAGTGCTTCAGCATATTTTGTAGTTCATACTTTGAGGAACATTGCTCATGATGGCAAGACTGTAATTGCATCCATACACCAACCAAGTAGTGAGGTTTTTCAACTTTTTGATGATCTCTTTTTGCTTTCTGGAGGCCAAACTATATATTTTGGACCAGCTGAAAACTCTGTTGAGTTCTTTGGGAAAGCAGGGTTCCCATGTCCAAGCAGAAGAAACCCTTCTGATCATTTCCTCCGCTGTATTAATTCAGACTTTGATGCTGTCACAACCACCATCATGGCCTCCCAAAGAATCCATGAACAAAAATCATGCATGAACCTATCAACCGCCGCAGTCAAAGCAAAACTCATTGAGAGATACCATTGGTCTGAATATGCAACCGCCGCGAGGACTAGAATCAAACAAATCTCCAACATTGAAGGACATGATAGTGAAAGCAAAAACAGGAGGCAAGCGAAATGGGGGAAGCAACTAACAACATTGACTCGTAGATCTTTCGTGAACATGTATAGGGATGTTGGGTACTACTGGATAAGGCTAGCAATCTACATAGCCTTATCTTTATCAGTTGGAACAATCTTCTTTGATGTCGGAACAAGTTACAGAGCCATCTTTGCAAGAGGCGCATGCGGTGCTTTCATTTCAGGTTTCATGACATTCATGTCCATTGGAGGCTTCCCCTCCTTCATAGAGGAAATGAAGGTGTTTTATAAAGAAAGGCTGAATGGATACTATGGAATTAGTGTCTACATTCTATCAAATTTTCTGTCTTCATTTCCCTTTGTGTCAATGATGTCCATTGCCACTGCCACCATAACCTATTACATGAGTTCCATGATGATCATAGCTTCATTAGTTCCCAACTTTCTCATGGGAGTGATAATAGGAGCAGGATATATTGGTGTTATGATGATGACTGCTGGCTACTTCCGTCAGATCAATGATCTTCCCAAATTCTTCTGGCGTTACCCAGTTTCATACATTAATTATGGAGCATGGGGTTTGGAGGGAGCATTCAAGAATGATTTGATTGGGCAGGAATTTGATCCTCTAGTACCAGGTGGTCCAAAGCTGAAAGGAGAAACCATACTCAAAAGCATGCTTGGCATGAGAATTGACTATTCAAAATGGTGGGACTTAGCTGCTGTGGTGTTCATCCTCATAGTGCTAAGAGTTCTCTTCTTCTTCATTCTCAGGTTCAAAGAGAACGCTTCAAATTTCCTTTATAGTATCTATGCAAAGCGAGCAATGCAACGCATCAAGAAGAGGCCATCTTTCAGGAAAACACCATCTTTCGCTTCAAAGAGGCACCAACCTCTGCATCCCTTGTCTTCTCAAGAGGGTCTCAACTCACCAATTCATTAA 1965 0.4102 MYYLVWEDLTVVVPNFGNGGHTRRLLNGLNGYAEPNRLMAIMGPSGSGKSTLLDSLADVVAWYDSNHAMLEYNNNELGRVARNVILSGNVLLNGKKRRLDYGGVAYVTQEDILLGTLTVRETICYSANLRLPSTMSKEEVNEIVEGTIMEMGLEDCGDRIIGNWHLRGISGGEKKRLSIALEILTRPSLLFLDEPTTGLDSASAYFVVHTLRNIAHDGKTVIASIHQPSSEVFQLFDDLFLLSGGQTIYFGPAENSVEFFGKAGFPCPSRRNPSDHFLRCINSDFDAVTTTIMASQRIHEQKSCMNLSTAAVKAKLIERYHWSEYATAARTRIKQISNIEGHDSESKNRRQAKWGKQLTTLTRRSFVNMYRDVGYYWIRLAIYIALSLSVGTIFFDVGTSYRAIFARGACGAFISGFMTFMSIGGFPSFIEEMKVFYKERLNGYYGISVYILSNFLSSFPFVSMMSIATATITYYMSSMMIIASLVPNFLMGVIIGAGYIGVMMMTAGYFRQINDLPKFFWRYPVSYINYGAWGLEGAFKNDLIGQEFDPLVPGGPKLKGETILKSMLGMRIDYSKWWDLAAVVFILIVLRVLFFFILRFKENASNFLYSIYAKRAMQRIKKRPSFRKTPSFASKRHQPLHPLSSQEGLNSPIH 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60701g00001 654 FunFam ABC transporter G family member 11 1 263 - -
Stsc60701g00001 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 265 IPR027417 -
Stsc60701g00001 654 CDD ABCG_EPDR 3 251 - -
Stsc60701g00001 654 ProSitePatterns ABC transporters family signature. 169 183 IPR017871 GO:0005524|GO:0016887
Stsc60701g00001 654 SMART AAA_5 35 254 IPR003593 GO:0016887
Stsc60701g00001 654 MobiDBLite consensus disorder prediction 638 654 - -
Stsc60701g00001 654 Gene3D - 3 260 IPR027417 -
Stsc60701g00001 654 Pfam ABC-2 type transporter 226 282 IPR043926 GO:0140359
Stsc60701g00001 654 MobiDBLite consensus disorder prediction 624 654 - -
Stsc60701g00001 654 Pfam ABC transporter 26 196 IPR003439 GO:0005524
Stsc60701g00001 654 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 3 478 - -
Stsc60701g00001 654 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 4 269 IPR003439 GO:0005524
Stsc60701g00001 654 Pfam ABC-2 type transporter 477 541 IPR013525 GO:0016020|GO:0140359
Stsc60701g00001 654 Pfam ABC-2 type transporter 357 476 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60701g00001 Stsc-Chr60701 2460 9627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60701g00001 24 240 Calmodulin-binding Proteins AT2G36910 28.571 3.28e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60701g00001 K05681 - gmx:100788651 1046.96