Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc60700g00002 | ATGTTAAAGGCAAAGGTATTCAATGGTGCGAATGTGTTCATGTCGCGGAACCTGGTTCCGCCAGAGGTATTTGATGCTCTTCATGATGTGCTCAAAGGCAATGGTGCACAGGTGCACCTCTGTTGCGATCCTTCCCGCAACGGTCCCAATGATTACCATGTCATTTCTTGCAGTAAACATGAGAAGTTTGAGGATCTTAAAGCCAAAGGCTGCAAATTGCTTGGACCCAGATGTGTTCTTTCATGTGCTAAAGAACTTAAGCCTTTGCCTAAACATGGATTTACGTGTTGCCTTGCCATGGATGGTGTCAAAGTACTTGCATCTGGCTTCGATACCAATGAAAAGGTTAAGATAGAAGAGATAGTGACTGAAATGGGTGGTGTTCTACATACTAAAACATCACTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTGGCTGCAAAATACAAGTGGGCTTTGAATATACTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGAAATGTTCAGAGGAGCATCGTGTTGTTCCTCAGGAGCCATACAAGGTCCTTCCTTTCTCTGGGTTGACGATTTGTGTTACTGGGATTCCAGCAGATAAGCGCAAAGAGATAGAGCAGCTCAGTTTACAAAATGGTGGAAAGTACTCTGCTGAATTGACAAAGAAGTGCACTCATTTGATTTCTGATATATCCTTCTATGCTCCTGAAGGTGACAAATATAAGGTAGCAAAACGTTGGGGCCACATTCATACTGTGACAAGGAAATGGTTCGATCAATCTATTGCTCGAAGAGCATGTTTGAATGAGGAGTCCTACCCAGTTCAGAATGGATTTGCATCTTCACAGAAAGTGATTAAGGACATGTATGTACAGCATAGCCAAGAAAGGTGTATTGGGAAATTGCAATCTGGAGTATCCTCAGCTGTTACAGATCCAAACATGCCAGTTTCTTCTTATGCTGAGTTTGTTGATAAAGACCAAGAAGCTACATGTTCAGAATACACATCTTCTTTTATGAATGCTGCTACATCTGTTAAAGATACAAATGCTGAAGCACCTCCAGGACAGCCCAATGCTGAATTGAACCTTGATGGCCCTGTTGCCAATGATTCTGAATCTGATGATAATGATCTGTACTTATCTGAATGCAAAATCTTACTTGTTGGCTTTGAAGCTTCTGACATGCGGAAACTAGTTAATATGGTGCGGAAAGGTGGAGGCTCCCGATATATGTCTTTAAATGCCAAGCTGACACACATTGTTGTTGGAAACCCTTCAGAATCGGAAAAGAAGGATGTAAGGAGTCTCGCCGCGTTGGGTGTCATTTATGTTGTTAAAACATCCTGGCTTGAAGATTGTAACCGCAAAAAGAAAGAAGTCCCTGTTCTAAGGAGACACATTGCATCTGATCTACTTCTTCCAAAAGGAAGAAATGTCAATGGAGCATTAACAGGCATGTCCATGGTTCAAGTTAAAACCTGTAGTTTTCCTCAAAGCTTGAAGAGTGCTCAGGTGTCGGGAGTTATGGCCTCTGGAGGTGTAAAGCCAGTATCTTTGGGGGAAAAGAACAAAGATAAGCTGGATATGGGTACAAGTGTTCACTCATTGAGTAAAGCAATGGGGAAAAATCAACATGCTGTTAATAAGATGCCAGTTCAAAAGATGACAGTGACACAAGATTCCCGTGTAGAATATGTCAAGTCCACAACAGTTTTCAAAGGGAAAATGTTTTGTTTCTCAGATTTATTTCCTGAAGAAAGGAGAGCTGAGGTCATTGAATGGATACATCAAGGGAGAGGACAAGTATTGAGTGGGAAAGCAAAACATGGTGTCCATTTTACGGTTGAATGTCATGGTGTAACACCCATGATGACCGGAAACTCCCAAAGTACATATGTTTCCACTCATTGGATACGATCTTGTTTAGAGGCTGGATACCTAAAGGATGTTGACAGTCATATTCTTTATTCTCCACTTACCTGTCAAGTTCCCTTGCCCGGGTTTGAAAGGTTTCGGTTTTGTGTTTCACAATATGACGAGCAAGAAAGAATTCTACTACGGAACTTGTGTTTTGTTTTGGGAGCCAAATTCATAGAGAAGTTAACAAAGAAGGTCACCCATTTATTGTGTAAATTCAAGGATGGACCCAAGTATGACTTCGCTTGTAAACGGGGGATCCAGTCAGTTACATCTGAATGGCTATTTGAATGTGTCAAACAGAATGGAGTTGTTGCCACTGACCGTTTTTTACCAAGAGAAATCACTCTTCAAGATCGACTGGCAGGAATTCGTACTGCGAGTCAATTTCCCACTCAGGCTGCTCAAATGATAAGTGATCTAACATCCCAGTTTCCAAGTCAATCACAAAATTTGACAGACAAAGTAAATAGAGGCACATGTAGAGGACTTGCCAGTAACGAGACTGATTTAAAAATATCAAATATTCAGAGCAAAAAGGCAAGGCTTATGGAAGAGCCTGGACTATATGATAAGGGATCTTCTGCAGTAGATTCAGGTATTCATCATGTCAATGGAATTAACTTTTCTGAAGACAATTCGGTAAAAGATGCTGGACAGGTTCCTCATGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTAGGTGGCAAAAAAGATGATGATGGCGAGGCTTCTGGAGACAGAGGAGCTGAAGCCTATGACGGTTTCAGTGAAACACAAACAGAATCTCAGGTTGTTGGTTATGAAGAAGATTTGTCCGGAAGGCAAATGCTTATTGACAGAGTTCGAACTCGAAGTAGCGCACATTAA | 2793 | 0.4114 | MLKAKVFNGANVFMSRNLVPPEVFDALHDVLKGNGAQVHLCCDPSRNGPNDYHVISCSKHEKFEDLKAKGCKLLGPRCVLSCAKELKPLPKHGFTCCLAMDGVKVLASGFDTNEKVKIEEIVTEMGGVLHTKTSLDLNFVIVKNVLAAKYKWALNILKKPIVTYEWLKKCSEEHRVVPQEPYKVLPFSGLTICVTGIPADKRKEIEQLSLQNGGKYSAELTKKCTHLISDISFYAPEGDKYKVAKRWGHIHTVTRKWFDQSIARRACLNEESYPVQNGFASSQKVIKDMYVQHSQERCIGKLQSGVSSAVTDPNMPVSSYAEFVDKDQEATCSEYTSSFMNAATSVKDTNAEAPPGQPNAELNLDGPVANDSESDDNDLYLSECKILLVGFEASDMRKLVNMVRKGGGSRYMSLNAKLTHIVVGNPSESEKKDVRSLAALGVIYVVKTSWLEDCNRKKKEVPVLRRHIASDLLLPKGRNVNGALTGMSMVQVKTCSFPQSLKSAQVSGVMASGGVKPVSLGEKNKDKLDMGTSVHSLSKAMGKNQHAVNKMPVQKMTVTQDSRVEYVKSTTVFKGKMFCFSDLFPEERRAEVIEWIHQGRGQVLSGKAKHGVHFTVECHGVTPMMTGNSQSTYVSTHWIRSCLEAGYLKDVDSHILYSPLTCQVPLPGFERFRFCVSQYDEQERILLRNLCFVLGAKFIEKLTKKVTHLLCKFKDGPKYDFACKRGIQSVTSEWLFECVKQNGVVATDRFLPREITLQDRLAGIRTASQFPTQAAQMISDLTSQFPSQSQNLTDKVNRGTCRGLASNETDLKISNIQSKKARLMEEPGLYDKGSSAVDSGIHHVNGINFSEDNSVKDAGQVPHAVPDVAAAIEDLGGKKDDDGEASGDRGAEAYDGFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSAH | 930 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc60700g00002 | 930 | MobiDBLite | consensus disorder prediction | 348 | 375 | - | - | |
| Stsc60700g00002 | 930 | ProSiteProfiles | BRCT domain profile. | 100 | 184 | IPR001357 | - | |
| Stsc60700g00002 | 930 | ProSiteProfiles | BRCT domain profile. | 182 | 275 | IPR001357 | - | |
| Stsc60700g00002 | 930 | SUPERFAMILY | BRCT domain | 571 | 658 | IPR036420 | - | |
| Stsc60700g00002 | 930 | Gene3D | BRCT domain | 663 | 754 | IPR036420 | - | |
| Stsc60700g00002 | 930 | Pfam | twin BRCT domain | 673 | 734 | IPR001357 | - | |
| Stsc60700g00002 | 930 | Pfam | twin BRCT domain | 190 | 257 | IPR001357 | - | |
| Stsc60700g00002 | 930 | Pfam | twin BRCT domain | 104 | 166 | IPR001357 | - | |
| Stsc60700g00002 | 930 | Gene3D | BRCT domain | 565 | 661 | IPR036420 | - | |
| Stsc60700g00002 | 930 | CDD | BRCT | 103 | 170 | - | - | |
| Stsc60700g00002 | 930 | Gene3D | BRCT domain | 39 | 94 | IPR036420 | - | |
| Stsc60700g00002 | 930 | CDD | BRCT_TopBP1_rpt2_like | 667 | 742 | - | - | |
| Stsc60700g00002 | 930 | ProSiteProfiles | BRCT domain profile. | 669 | 752 | IPR001357 | - | |
| Stsc60700g00002 | 930 | FunFam | DNA topoisomerase II binding protein 1 | 187 | 283 | - | - | |
| Stsc60700g00002 | 930 | Gene3D | BRCT domain | 368 | 465 | IPR036420 | - | |
| Stsc60700g00002 | 930 | CDD | BRCT_TopBP1_rpt2_like | 186 | 265 | - | - | |
| Stsc60700g00002 | 930 | Gene3D | BRCT domain | 186 | 276 | IPR036420 | - | |
| Stsc60700g00002 | 930 | Pfam | BRCA1 C Terminus (BRCT) domain | 378 | 454 | IPR001357 | - | |
| Stsc60700g00002 | 930 | MobiDBLite | consensus disorder prediction | 874 | 910 | - | - | |
| Stsc60700g00002 | 930 | ProSiteProfiles | BRCT domain profile. | 376 | 468 | IPR001357 | - | |
| Stsc60700g00002 | 930 | SMART | BRCT_7 | 184 | 265 | IPR001357 | - | |
| Stsc60700g00002 | 930 | SMART | BRCT_7 | 570 | 646 | IPR001357 | - | |
| Stsc60700g00002 | 930 | SMART | BRCT_7 | 4 | 86 | IPR001357 | - | |
| Stsc60700g00002 | 930 | SMART | BRCT_7 | 97 | 174 | IPR001357 | - | |
| Stsc60700g00002 | 930 | SMART | BRCT_7 | 378 | 458 | IPR001357 | - | |
| Stsc60700g00002 | 930 | SMART | BRCT_7 | 666 | 742 | IPR001357 | - | |
| Stsc60700g00002 | 930 | SUPERFAMILY | BRCT domain | 186 | 276 | IPR036420 | - | |
| Stsc60700g00002 | 930 | FunFam | Transcription coactivator | 97 | 185 | - | - | |
| Stsc60700g00002 | 930 | FunFam | Transcription coactivator | 565 | 662 | - | - | |
| Stsc60700g00002 | 930 | Gene3D | BRCT domain | 97 | 185 | IPR036420 | - | |
| Stsc60700g00002 | 930 | PANTHER | DNA REPLICATION REGULATOR DPB11-RELATED | 8 | 875 | - | - | |
| Stsc60700g00002 | 930 | MobiDBLite | consensus disorder prediction | 874 | 889 | - | - | |
| Stsc60700g00002 | 930 | ProSiteProfiles | BRCT domain profile. | 568 | 656 | IPR001357 | - | |
| Stsc60700g00002 | 930 | FunFam | Transcription coactivator | 358 | 468 | - | - | |
| Stsc60700g00002 | 930 | SUPERFAMILY | BRCT domain | 634 | 753 | IPR036420 | - | |
| Stsc60700g00002 | 930 | SUPERFAMILY | BRCT domain | 59 | 183 | IPR036420 | - | |
| Stsc60700g00002 | 930 | SUPERFAMILY | BRCT domain | 378 | 462 | IPR036420 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc60700g00002 | Stsc-Chr60700 | 6695 | 16553 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc60700g00002 | 878 | 928 | Core DNA Replication Machinery Family | AT1G77320 | 76.471 | 1.66e-15 | 79.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc60700g00002 | K10728 | - | gmx:100804966 | 1208.74 |