Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60699g00011 ATGGATGGTCTGGGTTGGGATCCTTCACAACTTGCTGCTAACAACATAGCAATGTTGGAAGGAGAAGATTACTCCATGTTTGTTAATAATCCCATGCAAGAGATGCACAAGTCTCATCATCATCATCATGCATATCCAAATTCTGAAAAAGTGATGATGATGAGCAACATGGTTCATCAGTACTCATCAGCAGCAGCACCAGAATCTGGCAGCAACAACAACAATGTTATTATGGCAGTGAAATCATCATCATCATCATCAACCAGTTGGGAAGTAGAAGAAGCCTTAATAACATCTAATCATCAATCATGGCCATCACTTTCAGTAGTCAACTATGTGCCAGATTTCAACATGGCCCACCAACAACAACAACTCATCAACAGCACAACACAGAATAATAATAACAACAACAATAATGGCTCATCATCATCATCATCCCTTGAATCACTGGATTGCTTGCTTTCAGCTACCAACAGCAACACAGACACTACTACTGCTACTTCTCTTGATGAAGATGATGGCATCTCCATTATTCTATCTGACTGCAGAAACTTCTGGAACTTCACCACTAATTATGGAGCCATCACTGCTTCCTCTGCTGAATCTGAAACCAATAATGCTTCTATCAAAAACAATAACATGCACTATCATCATCATGATAATGAAACAGTATCTCAAACTTCAAAGAGGAGCATCATCAATGACCAATATGATCACCTTATCAAATCTTCTTCTGCTGCTGCTGCAGCAACCACCACTGCTCCCTACTTCAGTATCTTTCATAGTAATTCTCCTTCCTCCACTGAAAGCGGCGTTTTCAAGCTTATCCAAGAGAATCCTCCTCCACCAAGATCCAAGAAACCAAGATGTGGTGGTAGTTCATCAAACATCAACTTCCAGCAACCTAATTCATCACATTCAACCATTGAAGAGCCTGATCCAGAGGCCATAGCACAGATGAAGGAGATGATATACAGAGCAGCAGCATTCAGGCCTGTGAACTTGGGATTGGAGGTTGCAGAGAAGCCAAAGAGGAAGAATGTGAAGATATCAAGTGATCCTCAAACAGTGGCTGCAAGGCAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTTCCTGGTGGAAGCAAGATGGACACTGCTTCAATGCTTGATGAAGCTGCTAACTACCTCAAGTTTCTTAGATCACAGGTCAAAGCTCTTGAAACCTTAGGCAACAAGCTTGACAATAATGTTCCTCCTCCTACCACCACCATTGCTTTCTCTTTCAACCCTTCTTTTCCCTATTTTCCCCATCATAAACCCTAG 1323 0.4157 MDGLGWDPSQLAANNIAMLEGEDYSMFVNNPMQEMHKSHHHHHAYPNSEKVMMMSNMVHQYSSAAAPESGSNNNNVIMAVKSSSSSSTSWEVEEALITSNHQSWPSLSVVNYVPDFNMAHQQQQLINSTTQNNNNNNNNGSSSSSSLESLDCLLSATNSNTDTTTATSLDEDDGISIILSDCRNFWNFTTNYGAITASSAESETNNASIKNNNMHYHHHDNETVSQTSKRSIINDQYDHLIKSSSAAAAATTTAPYFSIFHSNSPSSTESGVFKLIQENPPPPRSKKPRCGGSSSNINFQQPNSSHSTIEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVAEKPKRKNVKISSDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALETLGNKLDNNVPPPTTTIAFSFNPSFPYFPHHKP 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60699g00011 440 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 356 413 IPR036638 GO:0046983
Stsc60699g00011 440 Coils Coil 389 409 - -
Stsc60699g00011 440 SMART finulus 356 405 IPR011598 GO:0046983
Stsc60699g00011 440 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
Stsc60699g00011 440 MobiDBLite consensus disorder prediction 289 310 - -
Stsc60699g00011 440 Gene3D - 355 418 IPR036638 GO:0046983
Stsc60699g00011 440 MobiDBLite consensus disorder prediction 269 310 - -
Stsc60699g00011 440 Pfam Helix-loop-helix DNA-binding domain 360 399 IPR011598 GO:0046983
Stsc60699g00011 440 FunFam BHLH transcription factor 353 417 - -
Stsc60699g00011 440 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 162 429 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60699g00011 Stsc-Chr60699 38033 39355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60699g00011 149 435 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 51.155 7.11e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60699g00011 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60699g00011 - - aip:107612801 588.571