Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60698g00005 ATGGTGTCTCTGAAACTGCAGAAGCGCCTTGCGGCTAGCGTCCTCAAGTGTGGCAGAGGGAAGGTTTGGCTTGACCCCAATGAAGTCAATGAAATCTCCATGGCCAATTCTCGTCAAAACATTAGGAAGCTGGTTAAGGATGGTTTCATTATCAGGAAACCCACTAAGATTCACTCCCGTTCACGTGCCCGTAGGATGAAGGAAGCCAAGAGGAAAGGACGTCACTCTGGCTATGGTAAGCGTAAGGGTACCAGGGAGGCAAGGCTCCCAACTAAGATTCTTTGGATGAGGAGGATGCGTGTGCTCAGACGCTTGCTCCGCAAGTACAGGGAATCCAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTTAAGGGTAATGTTTTCAAGAACAAGAGAGTGCTGATGGAGAGCATTCACAAGTCCAAGGCTGAGAAAGCAAGAGAGAAGACCCTGTCTGACCAGTTTGAGGCCAAGCGTGCTAAGAACAAGGCCAGCAGAGAAAGGAAGATTGCTCGGAGGGAGGAGCGACTGGCCCAGGGTCCTGGAGAGAAGCCTGCACCCACTGCTGCCCCCGCCACAGCATCACAGCCTGCACAAGCAACAAAGAAAAGCAAGAAGTGA 633 0.5087 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKPAPTAAPATASQPAQATKKSKK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60698g00005 210 PANTHER 60S RIBOSOMAL PROTEIN L19 1 188 IPR039547 GO:0003723|GO:0003735|GO:0022625
Stsc60698g00005 210 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Stsc60698g00005 210 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Stsc60698g00005 210 FunFam Ribosomal protein L19 57 191 - -
Stsc60698g00005 210 MobiDBLite consensus disorder prediction 57 85 - -
Stsc60698g00005 210 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Stsc60698g00005 210 Gene3D - 57 188 - -
Stsc60698g00005 210 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Stsc60698g00005 210 MobiDBLite consensus disorder prediction 196 210 - -
Stsc60698g00005 210 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Stsc60698g00005 210 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Stsc60698g00005 210 FunFam Ribosomal protein L19 1 56 - -
Stsc60698g00005 210 MobiDBLite consensus disorder prediction 149 210 - -
Stsc60698g00005 210 MobiDBLite consensus disorder prediction 149 184 - -
Stsc60698g00005 210 MobiDBLite consensus disorder prediction 57 79 - -
Stsc60698g00005 210 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60698g00005 Stsc-Chr60698 18770 20526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60698g00005 1 210 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 85.377 4.81e-128 357