Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60698g00004 ATGTCCAACACCCACCCACTCTCAACAAATCTCCTTTGCCGTCAGGTCAGTGCACTTCTCATCTTTTCGCTTTCTTTCTTTTGTTGGTTTTGTTTTCTGAAAGTGGTGTTTTGTCAAACAGTTGGTGAGCAAGATCAGGGAAACTGCAAGCCCCCCGCGAAGAGGCAGAGGAAGAACCTGTACAGAGGGATCCGGCAGCGTCCATGGGGAAAATGGGCGGCGGAGATTCGCGATCCCAGGAAAGGTGTTCGTGTTTGGCTCGGAACCTTCAACACTGCTGAAGAAGCCGCCAGGGCCTACGACAGAGAAGCTCGTAAGATTCGTGGGAAGAAAGCGAAAGTGAACTTCCCCAACGAGGATGACGAATATTCCATTCAAGAATCTCGCAACATTTTTCCAAGCCTTCCTCCTCCGATTCGAAGATCGAATAACAATCATCTTCCCTTGTATCATCATGAGCAACAGCAGCAATATGGTGGAGCTAACACCAACAACAACAACTTGAACAACACGGCAAGGACTCTGAACCTCAACTTGGAATTTGGTTACGATCTGAACCATGGAGGGGCCCCATTTGTGAGTTGCGTTGATGAGAATTCTGAGTATGGTTCTGGTTCGGGTTCAGGTTCGGCGTCGGAGGTGGCAGTTGGGTCAAGTGGTGGTGATCAACATCAAGAGGAGAAGAAGAGCTACGAGGTGGAGAAGCTCTCGGAGGAGCTAATGGCTTATGAGAACTACATTGGGTTTTATGATCAGATGCCATTCTATGATGCACAATCTGCAGCTGCTGCCGCCGCCAACAACAACAACAACGTTGTTCAAGAAAGTGTGGTCGGGGAACTCTGGACCTTCGATGAATGA 861 0.489 MSNTHPLSTNLLCRQVSALLIFSLSFFCWFCFLKVVFCQTVGEQDQGNCKPPAKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQESRNIFPSLPPPIRRSNNNHLPLYHHEQQQQYGGANTNNNNLNNTARTLNLNLEFGYDLNHGGAPFVSCVDENSEYGSGSGSGSASEVAVGSSGGDQHQEEKKSYEVEKLSEELMAYENYIGFYDQMPFYDAQSAAAAAANNNNNVVQESVVGELWTFDE 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60698g00004 286 PANTHER DNA-BINDING DOMAIN 52 234 IPR044808 GO:0003700|GO:0009873
Stsc60698g00004 286 SUPERFAMILY DNA-binding domain 60 118 IPR016177 GO:0003677
Stsc60698g00004 286 CDD AP2 61 118 IPR001471 GO:0003700|GO:0006355
Stsc60698g00004 286 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Stsc60698g00004 286 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Stsc60698g00004 286 MobiDBLite consensus disorder prediction 201 219 - -
Stsc60698g00004 286 FunFam Ethylene-responsive transcription factor 2 59 118 - -
Stsc60698g00004 286 SMART rav1_2 60 123 IPR001471 GO:0003700|GO:0006355
Stsc60698g00004 286 MobiDBLite consensus disorder prediction 201 231 - -
Stsc60698g00004 286 ProSiteProfiles AP2/ERF domain profile. 60 117 IPR001471 GO:0003700|GO:0006355
Stsc60698g00004 286 Pfam AP2 domain 61 109 IPR001471 GO:0003700|GO:0006355
Stsc60698g00004 286 Gene3D AP2/ERF domain 60 118 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60698g00004 Stsc-Chr60698 15819 17370 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60698g00004 54 118 AP2-EREBP Transcription Factor Family AT2G47520 86.154 3.76e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc60698g00004 AP2 8.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60698g00004 K09286 - gmx:100819416 223.402