Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60698g00003 ATGTGTGGCGGTGCCATAATCGCTGAGTTCATCCCCCGCAACCGTTCTCGCCGCCTTACTGCCGCTGAAATCTGGCCCAACACATTCTCTACTAACCAAGGCGACGACTTTGACTTCGATTTCTCTCATCATCATGTCCAACACCCACCCACTCTCAACAAATCTCCTTTGCCGTCAGTTGGTGAGCAAGATCAGGGAAACTGCAAGCCCCCCGCGAAGAGGCAGAGGAAGAACCTGTACAGAGGGATCCGGCAGCGTCCATGGGGAAAATGGGCGGCGGAGATTCGCGATCCCAGGAAAGGTGTTCGTGTTTGGCTCGGAACCTTCAACACTGCTGAAGAAGCCGCCAGGGCCTACGACAGAGAAGCTCGTAAGATTCGTGGGAAGAAAGCGAAAGTGAACTTCCCCAACGAGGATGACGAATATTCCATTCAAGAATCTCGCAACATTTTTCCAAGCCTTCCTCCTCCGATTCGAAGATCGAATAACAATCATCTTCCCTTGTATCATCATGAGCAACAGCAGCAATATGGTGGAGCTAACACCAACAACAACAACTTGAACAACACGGCAAGGACTCTGAACCTCAACTTGGAATTTGGTTACGATCTGAACCATGGAGGGGCCCCATTTGTGAGTTGCGTTGATGAGAATTCTGAGTATGGTTCTGGTTCGGGTTCAGGTTCGGCGTCGGAGGTGGCAGTTGGGTCAAGTGGTGGTGATCAACATCAAGAGGAGAAGAAGAGCTACGAGGTGGAGAAGCTCTCGGAGGAGCTAATGGCTTATGAGAACTACATTGGGTTTTATGATCAGATGCCATTCTATGATGCACAATCTGCAGCTGCTGCCGCCGCCAACAACAACAACAACGTTGTTCAAGAAAGTGTGGTCGGGGAACTCTGGACCTTCGATGAATGA 918 0.5044 MCGGAIIAEFIPRNRSRRLTAAEIWPNTFSTNQGDDFDFDFSHHHVQHPPTLNKSPLPSVGEQDQGNCKPPAKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQESRNIFPSLPPPIRRSNNNHLPLYHHEQQQQYGGANTNNNNLNNTARTLNLNLEFGYDLNHGGAPFVSCVDENSEYGSGSGSGSASEVAVGSSGGDQHQEEKKSYEVEKLSEELMAYENYIGFYDQMPFYDAQSAAAAAANNNNNVVQESVVGELWTFDE 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60698g00003 305 Pfam AP2 domain 80 128 IPR001471 GO:0003700|GO:0006355
Stsc60698g00003 305 MobiDBLite consensus disorder prediction 220 250 - -
Stsc60698g00003 305 MobiDBLite consensus disorder prediction 220 238 - -
Stsc60698g00003 305 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Stsc60698g00003 305 CDD AP2 80 137 IPR001471 GO:0003700|GO:0006355
Stsc60698g00003 305 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Stsc60698g00003 305 FunFam Ethylene-responsive transcription factor 2 78 137 - -
Stsc60698g00003 305 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Stsc60698g00003 305 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Stsc60698g00003 305 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Stsc60698g00003 305 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Stsc60698g00003 305 PANTHER DNA-BINDING DOMAIN 67 253 IPR044808 GO:0003700|GO:0009873
Stsc60698g00003 305 MobiDBLite consensus disorder prediction 48 62 - -
Stsc60698g00003 305 MobiDBLite consensus disorder prediction 43 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60698g00003 Stsc-Chr60698 15819 17372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60698g00003 1 137 AP2-EREBP Transcription Factor Family AT3G16770 53.571 4.75e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc60698g00003 AP2 9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60698g00003 K09286 - gmx:100819416 288.5