Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60696g00004 ATGAAATCATCATCAAGAGTGAGTAGCAACACAGTGAAGTCGAGGGAGTCGCTTTCAAATTCGATGGTTTTTGGTTTTACAGCAAGTTCTTCACAAGAGATGCAAAAATCATCAATGGCCTTGTTTGGTGGGTTATTGGGTCAATACCAGAAGAGAAGGCTTCTCTTCACCTTTGAAGACACTAATAATAATAACAATAATAATCATAATAATAAAGTAGCCAGTAACAAAGTTAACCCCTGGCTTGAATCAATGAGAGCTTCTTCTCCTCCGCGAATCAACCCCAACAACAACAACAACCAAGACGTTGGTCATCCGTCGGCGTTGAAGATGTTCGACGAGATAACGTGGAAGTCGAAGGCGAAGAAGGTGGTTGTGTTTCTTGATTACGACGGAACTCTCTCCCCAATTGTTGCAGATCCGGAGAAAGCTTTCATGACCAAAAAGATGAGAGCAACACTAAAGGATATAGCAAGACTATTTCCCACTGCCATAGTTACTGGAAGGTGCATTGACAAGGTATATGAGTTTGTAAGATTGGGAGAAGTGTACTATGCTGGAAGCCATGGTATGGACATCAAGGGACCAACAACAAGAGGGCGCAATCATCATAAAGGTAATAATAATGAAGCGGTGCTCTTCCAACCTGCAAGTCAATTCCTGCCCATGATCAACCAGGTGTACAAGATCTTGGTAGAGAAAATGAAGGGTATTCCAGGGGCAAAAGTAGAAAACAACAAGTTTTGTTTGTCCGTGCACTTTAGATGTGTTGAAGAAAAGTGCTGGCCAGCATTGGCGGAGCAAGTTAATTCAGTGCTCAAAGAGTACCCAAAGCTTAAGCTAACACATGGGAGAAAAGTTATTGAGATTCGCCCAACTATAAAATGGGACAAGGGCAAGGCTATTGAATTCTTGTTAGAGTCACTAGGTTATGGAAATTCTAACAGCGTATTTCCAATCTATATTGGTGATGATAGAACTGATGAGGATGCTTTTAAGGTTCTACGTAGTAGGGGCCAAGGAATTGGTATTCTTGTTTCTCAAATTCAAAAAGAAACTAACGCTACCTACACTTTGCATGATCCTCTAGAGGTTGGACAATTTTTAAGGCGTTTGGCAGATTCCAACAAAAACAGGTTCTAG 1143 0.4121 MKSSSRVSSNTVKSRESLSNSMVFGFTASSSQEMQKSSMALFGGLLGQYQKRRLLFTFEDTNNNNNNNHNNKVASNKVNPWLESMRASSPPRINPNNNNNQDVGHPSALKMFDEITWKSKAKKVVVFLDYDGTLSPIVADPEKAFMTKKMRATLKDIARLFPTAIVTGRCIDKVYEFVRLGEVYYAGSHGMDIKGPTTRGRNHHKGNNNEAVLFQPASQFLPMINQVYKILVEKMKGIPGAKVENNKFCLSVHFRCVEEKCWPALAEQVNSVLKEYPKLKLTHGRKVIEIRPTIKWDKGKAIEFLLESLGYGNSNSVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSQIQKETNATYTLHDPLEVGQFLRRLADSNKNRF 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60696g00004 380 CDD HAD_TPP 125 366 - -
Stsc60696g00004 380 Gene3D - 126 359 IPR023214 -
Stsc60696g00004 380 SUPERFAMILY HAD-like 125 373 IPR036412 -
Stsc60696g00004 380 FunFam Trehalose 6-phosphate phosphatase 217 293 - -
Stsc60696g00004 380 Pfam Trehalose-phosphatase 127 362 IPR003337 GO:0003824|GO:0005992
Stsc60696g00004 380 NCBIfam HAD-IIB family hydrolase 126 337 IPR006379 -
Stsc60696g00004 380 Gene3D - 208 293 - -
Stsc60696g00004 380 FunFam Trehalose 6-phosphate phosphatase 223 380 - -
Stsc60696g00004 380 NCBIfam trehalose-phosphatase 121 373 IPR003337 GO:0003824|GO:0005992
Stsc60696g00004 380 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 66 377 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60696g00004 Stsc-Chr60696 36659 40012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60696g00004 265 376 Trehalose Biosynthesis Gene Families AT4G17770 32.773 2.52e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60696g00004 K01087 - gmx:100785139 459.914