Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60695g00006 ATGGCTGCAAACCGCAGAAGCTTGAAGCGCAAACTCGAACTTGATTTGGTTGCACTTGAATCAGATGGCGGCAAGTCTCCACGTCTGCTTCAAACCTCTCCTCCTTCTTCTCGTGACTTCTCTGCAATCATTCGTTCACACGTAGATCTCCTCAATTCGCCTTGCTCCACTTATGTGCATGACCGTGCTGCCCTGTATAGATCGCTCCATGCTCTCTCGGATCTGGCACAGAAAGAGGAAAAGGTTGATGATATCGTCAAGTGTGGTGTTATACCCGCTGTGGTGAGGCATTTGGAGGTGCCAATTGATAATGACTGTGTCTGCGGACCATATAATTTTGAGGTAGAGAAAAAATGTGCAATGATTCTCGGGCTTCTTGCTATAAAGCCAGAGCATCAAAACCTGATTGTTAATTCCGGAGCGTTGCCGTATATTGTGGATTTGTTAACGAGGCACAAAACTAGTAGCATTACTCCCGGTTATATTGGTCTTCTTAGGAGAGTAGCTGATGCAATAACTAGCCTTGCACATGAAAATACCACCATAAAAAACCTTGTCAGGACTCAAGGTGGTATCCCTCCACTCGTTGAATTGCTTGAATTCAATGATATAAATGTACAGAAGGCCGCCGCAGCAGCTCTGCGAACTCTTGCCTTCAAGAATGATGACAATAAGAATCAGATTGTTGAATGCAATGCATTACCAACTCTTGTGCTAATGCTACGATCAGAGGATCCTACTGTACATTATGAGGCGGTTGGTGTCATAGGAAACCTTGTACACTCTTCGCCCAATATTAAGAAAGAAGTTCTTCTAGCTGGGGCATTACAAGCTGTCATTGGATTGCTTAGTTCTAGCTGTTTGGAGAGTCAAAGGGAAGCAGCTCTTTTACTGGGTCAATTTGCTTCAACGGATACAGATTGCAAGGTTCATATTGCTCAAAGAGGGGCTATTCAACCATTAGTTGGCATGCTTAAGTCATCAGATTCACAGCTTAAGGAGATGTCAGCTTTTGCTCTAGGGAGGTTGGCGCAGGATTCACACAATCAAGCTGGTATTGCTTATCATGGAGGTATTGAGCCTCTAATTGATCTTCTTGGCTCAAAGATTGCGTTCATCCAGCACAATGCGGCTTTTGCTCTATATGGCCTGGTGGATAATATGGACAATATTGCAGACGTTATTCAGGCTGGTGGTTTTCAAAAACTTCAGGATGGAAGTTTCATAGCTCAAGCAACTAGAGAGTGTGTAGCAAAAACCTTAACAAGATTAGAGGAGAAGACCCAGGGGCGAGTATTGAAGCACTTGTTATATCTTATGCGCTTTGCAGAAAAGGCTATTCAACGGCGTGTAGTTCTTGCTCTTGCTCATTTATGTCCTATTGATGATTGTAGAACTATTTTCATTGAAAACAATGGATTAGAATTGCTGTTGGAACTTCTTGGATCTTCAAATCTTAAACAGGCACGTGTTGCTTCCCTGGCACTTCACAAGTTGGCTACCAGAGCCATTTCCGTCACTCTTGTTGATGTTGCACCTTCATCCCCAACTCACCAGGAGTGCTTAGGCAAGCACGGTGTTAACAATCCAAAACTCTCTGATGTCACATTCTTGGTTGAAGGCAAAAGATTCTATGCTCATCGAGTTTGTTTAGTCAAGTCAGATATATTTCGAGCAATGTTTGATGGTGGTTACAGGGAAAGGGAAGCCAAAGATATAGAGATTCCAAACATCAAATGGGATGTATTTGAATTGATGATGAGATATATATACACTGGAACAGCAGATGTTAGTTTAGATATTGCTCAGGATCTCCTCAAAGCTGCTGATCAGTATCTTCTTGAGGGTCTTAAGCGTCTCTGTGAAAACGCTATTTCGCAGGGTATTACTGTGGAAAATGTTGCACTAATGTACCAGATGTCAGATACTTTCAATGCAACTTCACTAAAACATTCATGCATAATGTTTGTGTTGGACCAATTTGATAAGCTGAGTTCCAAACCATGGTATGGCTACCTGGTTTGCAGCATTGTTCCCTACATACGCAAATTCTTCTCAACTTTACTCGGGAAGCCTAGTTCTGCTGATTCATGA 2094 0.4255 MAANRRSLKRKLELDLVALESDGGKSPRLLQTSPPSSRDFSAIIRSHVDLLNSPCSTYVHDRAALYRSLHALSDLAQKEEKVDDIVKCGVIPAVVRHLEVPIDNDCVCGPYNFEVEKKCAMILGLLAIKPEHQNLIVNSGALPYIVDLLTRHKTSSITPGYIGLLRRVADAITSLAHENTTIKNLVRTQGGIPPLVELLEFNDINVQKAAAAALRTLAFKNDDNKNQIVECNALPTLVLMLRSEDPTVHYEAVGVIGNLVHSSPNIKKEVLLAGALQAVIGLLSSSCLESQREAALLLGQFASTDTDCKVHIAQRGAIQPLVGMLKSSDSQLKEMSAFALGRLAQDSHNQAGIAYHGGIEPLIDLLGSKIAFIQHNAAFALYGLVDNMDNIADVIQAGGFQKLQDGSFIAQATRECVAKTLTRLEEKTQGRVLKHLLYLMRFAEKAIQRRVVLALAHLCPIDDCRTIFIENNGLELLLELLGSSNLKQARVASLALHKLATRAISVTLVDVAPSSPTHQECLGKHGVNNPKLSDVTFLVEGKRFYAHRVCLVKSDIFRAMFDGGYREREAKDIEIPNIKWDVFELMMRYIYTGTADVSLDIAQDLLKAADQYLLEGLKRLCENAISQGITVENVALMYQMSDTFNATSLKHSCIMFVLDQFDKLSSKPWYGYLVCSIVPYIRKFFSTLLGKPSSADS 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60695g00006 697 SMART arm_5 78 128 IPR000225 GO:0005515
Stsc60695g00006 697 SMART arm_5 305 345 IPR000225 GO:0005515
Stsc60695g00006 697 SMART arm_5 346 386 IPR000225 GO:0005515
Stsc60695g00006 697 SMART arm_5 221 261 IPR000225 GO:0005515
Stsc60695g00006 697 SMART arm_5 461 501 IPR000225 GO:0005515
Stsc60695g00006 697 SMART arm_5 263 303 IPR000225 GO:0005515
Stsc60695g00006 697 SMART arm_5 179 219 IPR000225 GO:0005515
Stsc60695g00006 697 SMART arm_5 129 177 IPR000225 GO:0005515
Stsc60695g00006 697 SUPERFAMILY ARM repeat 430 503 IPR016024 -
Stsc60695g00006 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 357 399 IPR000225 GO:0005515
Stsc60695g00006 697 SMART BTB_4 533 629 IPR000210 GO:0005515
Stsc60695g00006 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 190 225 IPR000225 GO:0005515
Stsc60695g00006 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 232 274 IPR000225 GO:0005515
Stsc60695g00006 697 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 3 693 IPR044282 -
Stsc60695g00006 697 ProSiteProfiles BTB domain profile. 533 599 IPR000210 GO:0005515
Stsc60695g00006 697 Pfam BTB/POZ domain 528 627 IPR000210 GO:0005515
Stsc60695g00006 697 SUPERFAMILY ARM repeat 44 393 IPR016024 -
Stsc60695g00006 697 Gene3D - 41 405 IPR011989 -
Stsc60695g00006 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 316 358 IPR000225 GO:0005515
Stsc60695g00006 697 Gene3D - 409 525 IPR011989 -
Stsc60695g00006 697 Pfam Armadillo/beta-catenin-like repeat 221 260 IPR000225 GO:0005515
Stsc60695g00006 697 Pfam Armadillo/beta-catenin-like repeat 185 218 IPR000225 GO:0005515
Stsc60695g00006 697 Gene3D Potassium Channel Kv1.1; Chain A 526 667 IPR011333 -
Stsc60695g00006 697 SUPERFAMILY POZ domain 527 626 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60695g00006 Stsc-Chr60695 37365 41756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60695g00006 137 494 U-box Gene Family AT2G23140 25.745 5.67e-18 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc60695g00006 BTB 4e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60695g00006 - - oeu:111401990 861.292