Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60695g00001 ATGTTGCAGGCTGCGGTGCAATCACTTCACTGGACTTACACCCTCTTTTGGAAATTCTCTCCACAACAACGAGTTCTTAAGTGGAGCGATGGATTCTACAACGGAGAAATTAAGGTTAGGAGGACAGTTGAAGCAATGGATAGTAGCAGTAGTAGTGAGGAGGAGGAGGCATCTCTACAGAGAACCAACCAGCTTAGAGACCTCTATTATGACTTACTATTGTCTGATGGCTCCGGCCAAGGAGACATCGTCGCTAATGAACCTCCGGCAACTCCACGGCCTTGGGCGGCCTTGTCGCCCGAGGATCTTAGCGAATCGGAATGGTACTATTTGATGTGTGTCTCCTTCTCTTTTCCTCCTGGTGTAGGGTTGCCTGGAAAGGCATATGCGAAGGAGCAGCATGTTTGGCTGGAAGGTGCAAACGAAGCGGATACCAAGATATTTTCAAGAGCAATTCTTGCCAAGACAGTGGTGTGCATTCCTCTGTTGGATGGAGTCGTTGAACTCGGCACAACTGATATGGTCCAAGAAAACATCAATTTCATCAATCATGTAAAGAGCTTCTTCATAGGAGATCACCACACTCTCCCACCAAAGCATGCCCTATCCGAAAACTCTGCCTCCAATCCCATTCTACAAGAACCTCAATTATTATTATTGGATTCAGAAACAGCAACAACCGTCCCTAGGGTTTTCACACAAAGCAATCTAATGGAGCTGGTCATGGCAGAGGACAGCCCGGCCGCGGCCGGATCCCCCGACGATGGCTCCTATCTCTTGGACTCAGGGTTGGGGCTACTTCCACTTGAACCAGCACTTTCAGTAGTAGAACTACTACATGGTGAATGTGATAACTCAGAGGCTGAAACTTCTCAGCTATGTATGGAACAAGAAGGCCACACACACTACTCTAAGACGGTGTCCACCATCCTAGAAGGCAGCTCCGGCCACGGCCAGCCGGATTCACTACCCTCTGTTCGCCGCTTATTAGTAGATTCCTTCCAATCAGCTTTTGCCAGGTGGAGCAACGGTGCCAATAACTGCCACGAGGTGCCGGTGGTTGAAAACCCACAACGGCTCCTCAAGAACATATTGTTTAGGGTTCCATACTTGCATGGCAAGCAAAAGCGGCACAACAACACTAATAATTCATCAGCACAAACCCTAGAACAATTGGACCTAATCAGCAGCCACGTGGCAGCGGAGCGGCGGCGTCGTGAGAAGCTGAACGAGAAGTTCATGACATTAAGGTCATTGGTACCATACGTGACCAAAATGGACAAGGCATCTATATTAGGAGACACAATTGAGTACGTGAAACAGTTGCATGAGAAGGTAAAGAAGCTGGAGGAGGAAGATGAAGGGCGGAGAAGTGGAAAGAAGAGGAAGGAGAGGGCGGTGGAGGTTTCGGTGATAGAGGGTGAGGTTTTGTTGGAGGTGGAGTGTGTGGAGAGGGAAGGGTTGTTACTTGATTTGATGAAGACATTGGAGGAGGTGGGAATAGAGGTGACAGGGGTAAAATCGTCATTTAAGGGTGATGGTGATGAAAGGGTGGTTGTGGTGGAGTTAAGAGGGAAGGTTAAGAAAATTGCAAAAAGGAAAAATAAGATTAGCATTGTGGAAGTGAAGAAGGTCCTTCACAACACTATAAACCCTCATCATCATCCACTACCATAA 1677 0.4782 MLQAAVQSLHWTYTLFWKFSPQQRVLKWSDGFYNGEIKVRRTVEAMDSSSSSEEEEASLQRTNQLRDLYYDLLLSDGSGQGDIVANEPPATPRPWAALSPEDLSESEWYYLMCVSFSFPPGVGLPGKAYAKEQHVWLEGANEADTKIFSRAILAKTVVCIPLLDGVVELGTTDMVQENINFINHVKSFFIGDHHTLPPKHALSENSASNPILQEPQLLLLDSETATTVPRVFTQSNLMELVMAEDSPAAAGSPDDGSYLLDSGLGLLPLEPALSVVELLHGECDNSEAETSQLCMEQEGHTHYSKTVSTILEGSSGHGQPDSLPSVRRLLVDSFQSAFARWSNGANNCHEVPVVENPQRLLKNILFRVPYLHGKQKRHNNTNNSSAQTLEQLDLISSHVAAERRRREKLNEKFMTLRSLVPYVTKMDKASILGDTIEYVKQLHEKVKKLEEEDEGRRSGKKRKERAVEVSVIEGEVLLEVECVEREGLLLDLMKTLEEVGIEVTGVKSSFKGDGDERVVVVELRGKVKKIAKRKNKISIVEVKKVLHNTINPHHHPLP 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60695g00001 558 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 393 442 IPR011598 GO:0046983
Stsc60695g00001 558 PANTHER TRANSCRIPTION FACTOR TT8 1 550 - -
Stsc60695g00001 558 Pfam Helix-loop-helix DNA-binding domain 397 443 IPR011598 GO:0046983
Stsc60695g00001 558 CDD ACT 478 526 - -
Stsc60695g00001 558 Gene3D - 395 466 IPR036638 GO:0046983
Stsc60695g00001 558 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 2 189 IPR025610 -
Stsc60695g00001 558 Coils Coil 432 452 - -
Stsc60695g00001 558 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 396 455 IPR036638 GO:0046983
Stsc60695g00001 558 SMART finulus 399 448 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60695g00001 Stsc-Chr60695 4567 8000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60695g00001 1 550 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 43.363 7.26e-132 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60695g00001 bHLH-MYC_N 2.9e-42 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60695g00001 - - aprc:113862120 420.624