Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60694g00009 ATGAAGAAAGCAATTAGCACAAGTAGTGAGTCTTCCAAACTTGACCGCAAAACCATTGAGAGGAACCGTAGAATTCACATGAAAACTCTCTGCTTCAAGCTAACTTCTCTTATTCCTCCTAACCATACTACATTCCCACAATATTCCAAATCCAAGGGCGCAATAGCACAGCAAGACCAGCTGGATCTGGCAGCACGGTACATCAAGCATATGACAGAAAGAATAGAGAAATTGAAGAAGCAGAAACAGCAAGTCATGATGGAGTCAAAAAACAACAACAACAGTAGTAATAATACAATAATGTGCAAAATTATAGACACAAAATTGCCACTGCTTGAGTTAAGAGCCTTTGGTTCTAGCATAGAAGTTGTGTTGGTTTGTGGATTAAGAAATAAAACCTTCATGTTTTATGAAGTTATTAGTGTACTTGAGGAAGAAGGTGCTGCAGTTGTTACTGCAAGCTTCTCAACAGTGGGGGACAAAATATTTTACATTGTTCATGCTCAGGAAAAAATATCAAGAGTTGGTGTGGAGACGACAAGGGTGCATGAGAGGCTTCGGGAGTTGATTACCCCAATAGAAATGTGGGACGACTATCTTTGA 603 0.3947 MKKAISTSSESSKLDRKTIERNRRIHMKTLCFKLTSLIPPNHTTFPQYSKSKGAIAQQDQLDLAARYIKHMTERIEKLKKQKQQVMMESKNNNNSSNNTIMCKIIDTKLPLLELRAFGSSIEVVLVCGLRNKTFMFYEVISVLEEEGAAVVTASFSTVGDKIFYIVHAQEKISRVGVETTRVHERLRELITPIEMWDDYL 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60694g00009 200 Pfam Helix-loop-helix DNA-binding domain 16 71 IPR011598 GO:0046983
Stsc60694g00009 200 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 71 IPR011598 GO:0046983
Stsc60694g00009 200 Gene3D - 11 100 IPR036638 GO:0046983
Stsc60694g00009 200 SMART finulus 17 77 IPR011598 GO:0046983
Stsc60694g00009 200 Coils Coil 61 88 - -
Stsc60694g00009 200 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 189 - -
Stsc60694g00009 200 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 15 88 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60694g00009 Stsc-Chr60694 49382 51035 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60694g00009 1 193 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 33.668 1.37e-24 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60694g00009 HLH 1.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60694g00009 - - gmx:100790403 238.81