Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60694g00006 ATGAACAGAACACACTCTCCATCTTGCAAACCTGTGTATCTTGATTGCAAACTTTTGGATGATCCAGCAAGGCAAGCATGGTTTAAGAGAACCAAAGTGCTGGCTGACTGTGATGCACTCAATGATAAGAATGACTTTCAATTTGGAATGTTTGCTGATGCTTTTACTGACCATGTCTCTTCCTCCACATTTTCTCAGAAGTATTTTTATTGCCTTTGGTGGGGCTTAAAAAATTTAACATCTTATGCTCAGGGTCTTAATACGAGCACTTACGTTGGTGAAACTGTATTTTCAAGTTTCATATGCATTGCAGGTTCAATTCTTTTTGCGCATCTCATCGGTAATATGCAGAATTACCTGCAATCTTCAACTGCAAGACTTGAAGAATGGAGACTTAAACAAAAGGATACAGAAGAGTGGATGAATCATCGACAACTTCCCCCGGAACTTCAACAACGCATTCGAAGGTTTGTCCAATATAAATGGCTTGCCACAAGAGGCGTAGATGAAGAAGCTATTTTGCGTGATTTGCCTATTGATCTTCGTCGCCAGATTCAAAGGCATCTTTGTCTTGACATTGTTCGTCGGGTTCCTTTCTTTGGGCAAATGGATGATCAACTCTTAGATGCCATATGTGAACGACTTGTTGCATCCTTAAACACAAAAGACACCTACATTGTTAGAGAAGGTGATCCAGTAAGAGAAATGCTCTTCATCATTAGAGGACAACTTGAGAGCTCATCAACTGATGGTGGGAGAATAGGGTACTACAACTCGATCATTCTTAGACCTGGTGATTTCTGTGGTGAAGAGTTGCTGACGTGGGCCTTGATGCCCACGTCGAGCCTCAACCTTCCAGACTCCACTAGAACTGTCAAAACTGTTACTGAAGTCGAAGCGTTTGCTCTCAGAGCTGAGGATCTCAAATTTGTTTCTAACCAATTCAAGCGTCTCCATAGCAAGAAGCTCCAACATGCTTTTAGGTACTATTCTCATCAATGGAGGGCTTGGGGGGCTTCCTTTATACAAGCTGCTTGGAGACGCCACCATAAGAAAAAACTGGCAATGGAGTTGTTACAAAAAGAAAACTTGTTCTCAAATATGGAGCAACAAGATGATGAAGATGAACAACAAGCTGTAGGAGGGAGTTCAAGTCGTGGAAACAATCTTTCGACTACCGTTTTGGCATCTAGGTTTGCTACAAACACTAGAAAAGGTGCTGCTAAAAAAGTTTCAATACCTGATAGTGACAGTATGAAGATGCCCAAAATGTTCAAGCCAACAGAACCTGATTTTTCAACTTTCCAAGACGAAAATTAA 1320 0.4114 MNRTHSPSCKPVYLDCKLLDDPARQAWFKRTKVLADCDALNDKNDFQFGMFADAFTDHVSSSTFSQKYFYCLWWGLKNLTSYAQGLNTSTYVGETVFSSFICIAGSILFAHLIGNMQNYLQSSTARLEEWRLKQKDTEEWMNHRQLPPELQQRIRRFVQYKWLATRGVDEEAILRDLPIDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVASLNTKDTYIVREGDPVREMLFIIRGQLESSSTDGGRIGYYNSIILRPGDFCGEELLTWALMPTSSLNLPDSTRTVKTVTEVEAFALRAEDLKFVSNQFKRLHSKKLQHAFRYYSHQWRAWGASFIQAAWRRHHKKKLAMELLQKENLFSNMEQQDDEDEQQAVGGSSSRGNNLSTTVLASRFATNTRKGAAKKVSIPDSDSMKMPKMFKPTEPDFSTFQDEN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60694g00006 439 FunFam Cyclic nucleotide-gated ion channel 1 126 190 - -
Stsc60694g00006 439 Coils Coil 351 371 - -
Stsc60694g00006 439 Pfam Cyclic nucleotide-binding domain 222 309 IPR000595 -
Stsc60694g00006 439 CDD CAP_ED 199 330 IPR000595 -
Stsc60694g00006 439 SUPERFAMILY cAMP-binding domain-like 128 325 IPR018490 -
Stsc60694g00006 439 FunFam Cyclic nucleotide-gated ion channel 1 197 315 - -
Stsc60694g00006 439 SMART cnmp_10 199 327 IPR000595 -
Stsc60694g00006 439 SUPERFAMILY Voltage-gated potassium channels 63 162 - -
Stsc60694g00006 439 Gene3D Jelly Rolls 197 317 IPR014710 -
Stsc60694g00006 439 ProSiteProfiles cAMP/cGMP binding motif profile. 199 282 IPR000595 -
Stsc60694g00006 439 Gene3D Helix hairpin bin 125 190 - -
Stsc60694g00006 439 MobiDBLite consensus disorder prediction 369 439 - -
Stsc60694g00006 439 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 432 - -
Stsc60694g00006 439 Pfam Ion transport protein 61 126 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc60694g00006 439 MobiDBLite consensus disorder prediction 377 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60694g00006 Stsc-Chr60694 26054 32330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60694g00006 1 432 Ion Channels AT3G48010 67.634 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60694g00006 K05391 - gmx:100785326 746.888