Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60694g00005 ATGATGATGAACCCTAGCGACTTGCACCGATTCGCGGTGACAAATCGATTCACCCGATTCCCAAAATCGTTCTCCCTCAGGAAGAAGGTACCATGGTGGTACCAAATACTTGACCCACGCTCCAGATTCATCGCAAGATGGAACCGCACCTTCCTTTATGCGTGCATTGTGGCACTCTTTCTTGACCCTCTCTACTTCTACTATCCGATAACCGGTGACAAGGCTTGCATGCAAACCGATTGGTACCTCGGCGTCGTCGTCACCTTCGCCAGAACCGTCGCCGATCTCTTCTTCCTCTTCCACATGGTCCTCAAATTCAGGACCGCCTATGTCAACCCTCTCACTCGTGTTTATGGCCACAAGGAACTCGTCACGGATCCTCACCTCATTGCCAAAAGGTATCTCAAGCATGATTTCATCGTCGATCTACTTGCCACCCTTCCTTTGCCCCAGGTTTTGGGGGCTTCATGGTATGTGTCATCCATCCAAAGACAATTTGAGTGTTGGAGAATAACTTGTAGGAAGGAGATGAACAGAACACACTCTCCATCTTGCAAACCTGTGTATCTTGATTGCAAACTTTTGGATGATCCAGCAAGGCAAGCATGGTTTAAGAGAACCAAAGTGCTGGCTGACTGTGATGCACTCAATGATAAGAATGACTTTCAATTTGGAATGTTTGCTGATGCTTTTACTGACCATGTCTCTTCCTCCACATTTTCTCAGAAGTATTTTTATTGCCTTTGGTGGGGCTTAAAAAATTTAACATCTTATGCTCAGGGTCTTAATACGAGCACTTACGTTGGTGAAACTGTATTTTCAAGTTTCATATGCATTGCAGGTTCAATTCTTTTTGCGCATCTCATCGGTAATATGCAGAATTACCTGCAATCTTCAACTGCAAGACTTGAAGAATGGAGACTTAAACAAAAGGATACAGAAGAGTGGATGAATCATCGACAACTTCCCCCGGAACTTCAACAACGCATTCGAAGGTTTGTCCAATATAAATGGCTTGCCACAAGAGGCGTAGATGAAGAAGCTATTTTGCGTGATTTGCCTATTGATCTTCGTCGCCAGATTCAAAGGCATCTTTGTCTTGACATTGTTCGTCGGGTTCCTTTCTTTGGGCAAATGGATGATCAACTCTTAGATGCCATATGTGAACGACTTGTTGCATCCTTAAACACAAAAGACACCTACATTGTTAGAGAAGGTGATCCAGTAAGAGAAATGCTCTTCATCATTAGAGGACAACTTGAGAGCTCATCAACTGATGGTGGGAGAATAGGGTACTACAACTCGATCATTCTTAGACCTGGTGATTTCTGTGGTGAAGAGTTGCTGACGTGGGCCTTGATGCCCACGTCGAGCCTCAACCTTCCAGACTCCACTAGAACTGTCAAAACTGTTACTGAAGTCGAAGCGTTTGCTCTCAGAGCTGAGGATCTCAAATTTGTTTCTAACCAATTCAAGCGTCTCCATAGCAAGAAGCTCCAACATGCTTTTAGGTACTATTCTCATCAATGGAGGGCTTGGGGGGCTTCCTTTATACAAGCTGCTTGGAGACGCCACCATAAGAAAAAACTGGCAATGGAGTTGTTACAAAAAGAAAACTTGTTCTCAAATATGGAGCAACAAGATGATGAAGATGAACAACAAGCTGTAGGAGGGAGTTCAAGTCGTGGAAACAATCTTTCGACTACCGTTTTGGCATCTAGGTTTGCTACAAACACTAGAAAAGGTGCTGCTAAAAAAGTTTCAATACCTGATAGTGACAGTATGAAGATGCCCAAAATGTTCAAGCCAACAGAACCTGATTTTTCAACTTTCCAAGACGAAAATTAA 1848 0.4361 MMMNPSDLHRFAVTNRFTRFPKSFSLRKKVPWWYQILDPRSRFIARWNRTFLYACIVALFLDPLYFYYPITGDKACMQTDWYLGVVVTFARTVADLFFLFHMVLKFRTAYVNPLTRVYGHKELVTDPHLIAKRYLKHDFIVDLLATLPLPQVLGASWYVSSIQRQFECWRITCRKEMNRTHSPSCKPVYLDCKLLDDPARQAWFKRTKVLADCDALNDKNDFQFGMFADAFTDHVSSSTFSQKYFYCLWWGLKNLTSYAQGLNTSTYVGETVFSSFICIAGSILFAHLIGNMQNYLQSSTARLEEWRLKQKDTEEWMNHRQLPPELQQRIRRFVQYKWLATRGVDEEAILRDLPIDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVASLNTKDTYIVREGDPVREMLFIIRGQLESSSTDGGRIGYYNSIILRPGDFCGEELLTWALMPTSSLNLPDSTRTVKTVTEVEAFALRAEDLKFVSNQFKRLHSKKLQHAFRYYSHQWRAWGASFIQAAWRRHHKKKLAMELLQKENLFSNMEQQDDEDEQQAVGGSSSRGNNLSTTVLASRFATNTRKGAAKKVSIPDSDSMKMPKMFKPTEPDFSTFQDEN 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60694g00005 615 PRINTS EAG/ELK/ERG potassium channel family signature 102 111 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc60694g00005 615 PRINTS EAG/ELK/ERG potassium channel family signature 244 261 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc60694g00005 615 PRINTS EAG/ELK/ERG potassium channel family signature 270 281 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc60694g00005 615 PRINTS EAG/ELK/ERG potassium channel family signature 288 297 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc60694g00005 615 PRINTS EAG/ELK/ERG potassium channel family signature 338 345 IPR003938 GO:0005249|GO:0006813|GO:0016020
Stsc60694g00005 615 Gene3D Helix hairpin bin 301 366 - -
Stsc60694g00005 615 Pfam Ion transport protein 229 302 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc60694g00005 615 Pfam Ion transport protein 47 171 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc60694g00005 615 CDD CAP_ED 375 506 IPR000595 -
Stsc60694g00005 615 FunFam Cyclic nucleotide-gated ion channel 1 373 491 - -
Stsc60694g00005 615 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 152 608 - -
Stsc60694g00005 615 Gene3D Jelly Rolls 373 493 IPR014710 -
Stsc60694g00005 615 SUPERFAMILY cAMP-binding domain-like 304 500 IPR018490 -
Stsc60694g00005 615 SUPERFAMILY Voltage-gated potassium channels 38 297 - -
Stsc60694g00005 615 MobiDBLite consensus disorder prediction 545 615 - -
Stsc60694g00005 615 MobiDBLite consensus disorder prediction 553 576 - -
Stsc60694g00005 615 ProSiteProfiles cAMP/cGMP binding motif profile. 375 458 IPR000595 -
Stsc60694g00005 615 FunFam Cyclic nucleotide-gated ion channel 1 302 366 - -
Stsc60694g00005 615 SMART cnmp_10 375 503 IPR000595 -
Stsc60694g00005 615 Pfam Cyclic nucleotide-binding domain 398 485 IPR000595 -
Stsc60694g00005 615 Coils Coil 527 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60694g00005 Stsc-Chr60694 26054 32330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60694g00005 142 608 Ion Channels AT3G48010 66.460 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60694g00005 K05391 - gmx:100783672 796.193