Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60694g00001 ATGACGAAGCAAGCTCGAAGGAAAGAAAAACGGAAAATAACAGAAACAAATTCAGGCGCGTCCAAAAACGATATATTAGTTATAATAAGGGATGTGACGCGCAACCTTCACTTCCTCTTACAAGATTGCTCCCGCGAAGGCGCCCGCCTCTTCATGCTCCTCAAGTTCCGCCACGTGGCATCCCAATTCCGGTCTCTCTTTGGTACTATCGCTGATGCCCTCGACAAGCTGCCCCTCCACGTCATCAAAGTTTGTTGGGAAGTTAGAGAGTTAGTTGAGTTAGTTAGGAAACAAGCCAGGAAAGTCACCTTCGAGCTCGATCCGGAAGACCAAACCGAAGCCCAACGAGTTAACTCGGTTTTGCAGCAGTTCGAGAGAGGAACCGAGCCTGATTTAAACGCCATGAAGCGAACCCTCACCTACCTCGAAATCAAGACATGGATTGATTGTAAAAGAGAGGTGAAGTTTCTAGAAGACGTGATGCTCTCTTCCGCGTCCTCTGTTTCTGACGATGAAGAGGCTTCCTTGTTGAGCGGTTTGATTTCGTTCCTGTGTTACTGCAGAGGAGTGATATTCGAAGACGTTGATTTCGAGTCCCTTCATGAAAATTCCCAATACGAAGGAAGGAGCAGTGCCGGTGGTGGCAGCGAAGTGTTGAGCTGCGAGAGGCGGCCGCCGGAGGATTTCCGGTGTCCAATCTCACTGGAGTTGATGACTGATCCGGTCACCACTTCCACCGGCCAGACTTACGATCGAACCTCGATTCAGAAATGGCTTAAAGCTGGAAATAGTGTGTGTCCCAAAACAGGGGAGAGGCTAATCAATACAGAGTTGGTTCCAAACACGTCACTCAAAAGGCTCATCCAACAGTTCTGCGTTGATAATGGCATCTCAGTGGCGAAGCCAAGCATCCGGAGTCACCACCGCAGTGGAGCATCGGCCGAGGCTGGTAGTCCAGCAGCGGCCCACGCCATACAGTTCCTCTGCTGGTTTCTTGCCCGGAGACTCGCGTTTGGAACAGAGGAGCAACAGAACAAGGCTGCTTATGAGGTTCGCCTGCTCGCGAGGTCCAACGTTTTCAACCGGTCGTGTTTGGTGGAGGTTGGGACAGTGCCTCCTTTGATTGATCTTGTTAGCACCGGTGGCAGAACTGTTCAAGAGAATGCAATGGCTGCATTGTTGAAGCTCTCGAAGCATAGCAGTGGCCAGCAATGTATAATGGAAAGCAGGGGTTTGGCGCCAATTCTCAAAGTACTAAATAGAGGGCTTAGTTTCCAAGCTCGCCAAATCGCAGCTGCTATTATGTTCTATCTTTGTTCCAAGAAAGAATATAGGAAAACCATTGGAGATAATCCGGAGGCTATTTCCGGTTTGGTGGATATGATCAAAGAAGAAAGAACAGACAATGCTACAATGTGTGGGAAAAAGAACGCCGTGGTTGCGATTTTCGGGCTGCTCTTACATCCCGGGAATCATTCAAAAGTGCTGGCAGCCGGTGCCGTTCCTGCAATTGTTAGGGTGTTATCTTCTTCCATGGATAATACTAGTCTTGTAACAGATTGCCTAGCTGTTCTAGCCGCGATGGCGGAGACAACTGAGGGATCAACCGCTGTGTTACAAGCTGAGGCATTGCATATGATCATTTGGTTCTTGCAATCCGAAACTTCGCGAGTGGTGAAGGAGCATTGCGTGTCGATTTTGATGTCCCTTTGTGTCCATGGTGGTTCAGGTGTTGTAGCTTTTCTTGTTGAGGAATCTTCAATCATGCCTTTGCTATATTCCATCATCACTGATGGTACCCCTCATGCTGCAAAGAAAGCACGGTCGCTCATCAGAGTTTTGCAGGAATTCAATGAACAAAGAACTTCTGGATTGGCGGGTTCCTCATCAGTTCTGCGACAACCCTTGATCCACATGAGTTAG 1923 0.4867 MTKQARRKEKRKITETNSGASKNDILVIIRDVTRNLHFLLQDCSREGARLFMLLKFRHVASQFRSLFGTIADALDKLPLHVIKVCWEVRELVELVRKQARKVTFELDPEDQTEAQRVNSVLQQFERGTEPDLNAMKRTLTYLEIKTWIDCKREVKFLEDVMLSSASSVSDDEEASLLSGLISFLCYCRGVIFEDVDFESLHENSQYEGRSSAGGGSEVLSCERRPPEDFRCPISLELMTDPVTTSTGQTYDRTSIQKWLKAGNSVCPKTGERLINTELVPNTSLKRLIQQFCVDNGISVAKPSIRSHHRSGASAEAGSPAAAHAIQFLCWFLARRLAFGTEEQQNKAAYEVRLLARSNVFNRSCLVEVGTVPPLIDLVSTGGRTVQENAMAALLKLSKHSSGQQCIMESRGLAPILKVLNRGLSFQARQIAAAIMFYLCSKKEYRKTIGDNPEAISGLVDMIKEERTDNATMCGKKNAVVAIFGLLLHPGNHSKVLAAGAVPAIVRVLSSSMDNTSLVTDCLAVLAAMAETTEGSTAVLQAEALHMIIWFLQSETSRVVKEHCVSILMSLCVHGGSGVVAFLVEESSIMPLLYSIITDGTPHAAKKARSLIRVLQEFNEQRTSGLAGSSSVLRQPLIHMS 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60694g00001 640 Pfam U-box domain 226 295 IPR003613 GO:0004842|GO:0016567
Stsc60694g00001 640 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 300 IPR013083 -
Stsc60694g00001 640 SUPERFAMILY RING/U-box 221 299 - -
Stsc60694g00001 640 PANTHER U BOX DOMAIN-CONTAINING 31 614 - -
Stsc60694g00001 640 SMART Ubox_2 228 291 IPR003613 GO:0004842|GO:0016567
Stsc60694g00001 640 FunFam RING-type E3 ubiquitin transferase 225 297 - -
Stsc60694g00001 640 Gene3D - 332 478 IPR011989 -
Stsc60694g00001 640 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 499 543 IPR000225 GO:0005515
Stsc60694g00001 640 FunFam RING-type E3 ubiquitin transferase 306 625 - -
Stsc60694g00001 640 ProSiteProfiles U-box domain profile. 224 298 IPR003613 GO:0004842|GO:0016567
Stsc60694g00001 640 SMART arm_5 358 398 IPR000225 GO:0005515
Stsc60694g00001 640 SMART arm_5 488 530 IPR000225 GO:0005515
Stsc60694g00001 640 SMART arm_5 399 440 IPR000225 GO:0005515
Stsc60694g00001 640 CDD RING-Ubox_PUB 226 278 IPR045210 -
Stsc60694g00001 640 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 369 411 IPR000225 GO:0005515
Stsc60694g00001 640 Gene3D - 479 636 IPR011989 -
Stsc60694g00001 640 SUPERFAMILY ARM repeat 333 617 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60694g00001 Stsc-Chr60694 6727 9889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60694g00001 34 622 U-box Gene Family AT1G10560 37.983 6.50e-134 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60694g00001 - - aip:107640973 1043.11