Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60693g00005 ATGTTGTATTCCAAAAATGGGTACTGGCAGGTTAGTGTTCCATGCAGCAGTTTGCTGACCATAGTGACAGTTAGATGTGGGCATTGTGCCAATCTGCTATCAGTTAACATGGGAGCATCTCTTCAAACATTGCCTCCTCAAGACCCTCATCATCATCAGAAGCAGCACCTGAGCTTCCAAGATCCAAGCAGCAAGGAACTGGGATCATCTTCATCTAGATGCAACAAGCTAGCAGCAGCATTTGATCCTGTAGACCATGATCCCCAACCTAGGATCCCTCCCATTCGTCCTCCGGAAAAGAGACAACGCGTTCCTTCTGCTTATAACCGATTCATTAAGGAGGAAATCCAAAGAATCAAGGCTAGCAATCCAGACATAAGCCACAGGGAAGCTTTCAGCACAGCAGCCAAAAATTGGGCTCATTTCCCTCACATTCACTTTGGATTAAAGCTGGATGGAAACAAACAAGCAAAGTTGGACCAAGGGGAAGGGACTCAAAAGTCTAATGGATTCTACTGA 519 0.4566 MLYSKNGYWQVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQTLPPQDPHHHQKQHLSFQDPSSKELGSSSSRCNKLAAAFDPVDHDPQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQGEGTQKSNGFY 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60693g00005 172 CDD HMG-box_SF 103 139 - -
Stsc60693g00005 172 Pfam YABBY protein 10 149 IPR006780 GO:0007275
Stsc60693g00005 172 PANTHER PROTEIN YABBY 6-RELATED 9 159 IPR006780 GO:0007275
Stsc60693g00005 172 MobiDBLite consensus disorder prediction 60 76 - -
Stsc60693g00005 172 MobiDBLite consensus disorder prediction 43 104 - -
Stsc60693g00005 172 FunFam Axial regulator YABBY 94 164 - -
Stsc60693g00005 172 SUPERFAMILY HMG-box 94 142 IPR036910 -
Stsc60693g00005 172 Gene3D High mobility group box domain 94 161 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60693g00005 Stsc-Chr60693 34685 39166 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60693g00005 11 172 C2C2-YABBY Transcription Factor Family AT1G08465 65.868 6.94e-68 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Stsc60693g00005 YABBY 5.6e-60 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60693g00005 K25796 - gmx:100785458 259.996