Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60693g00002 ATGGAGGGTTCTCCTGGGATTGAAGATAGTGGCAAGTCTGAGGCGCATTTGACTTCAGCTGCTGCTTTTGTGGAGGGTGGAATTCAGGATGCTTGTGACGATGCTTGCAGTATCTGTCTTGAAGCCTTCTGTGACAGTGATCCTTCCACCGTGACAAGTTGCAAGCATGAGTTTCATTTTCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAGTGTCCCATGTGTTGGCAACCCCTCAGTCTCAAAGATCCATCCAGCCAGGAACTTCTTGAGGCTGTGGAAAGAGAGAGGAACATCAGGTTGAATCCACCTAGAAATGCCACAATATTTCATCATCCAACTCTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCAAATGATGCTGATCTTGAGGAGCATATAATCCAACACCTGGCTGCTGCTGCGGCAATGGGTCGAGCACGTCACATTGCAAGAAGGGAAGGCCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCTCATTTTTTGGTATGGTCGACCCATCCCAATTCACCTCCTGTCGCTCCTGCTTCTTCCTCTCCTACTCACAGCCAGAGGGGGGATGGTGAACCAACACCTGCAGTTGCTTTTGCCACTCTTTCTCCAGGTCCTGCAACTGGAGAAGAATCACCACAGCTTACTTTAGTGCCTCCCCCTGTTGTAGCTGAACAGGTTTCTGCTTCAGGATCTGGGCCTACACTCACAACTGATCATCAGGGATCATCTAACAATAGGAGATCTCCTAGCCAGTCTTCTCCAACTAGTCAAGACAGAGCGGGGCCATCAGAATTACAGTCCTTTTCAGAATCTCTGAAATCTAAATTAAATGCTGTGTCATCAAGATACAAGGAGTCATTTTCCAAGAGCACAAGAGGGTGGAAGGAGAGATGGTTCTCTCGTAATACCTCTATGTCTGATATTGGAACTGAAGTTAGACGCGAAGTTAATGCTGGGATTGCAACTGTGTCACGAATGATGGAACGCCTGGAAACCAGAGACGGTAACAGAAGCAATAGCAATACTGCACCAAGTAATTTGGAGGATGGTTCGGTTCAGGGATCAAGGGATCAGCATTTAACAGAAACCGGAGCGAGTCAACTGAGAGACACCAACACAGAAACATCTTGTGCTGCAGGTTCTAGCTCTAGTTAA 1179 0.4758 MEGSPGIEDSGKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHFQCILEWCQRSSQCPMCWQPLSLKDPSSQELLEAVERERNIRLNPPRNATIFHHPTLGDFELQHLPVGANDADLEEHIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVWSTHPNSPPVAPASSSPTHSQRGDGEPTPAVAFATLSPGPATGEESPQLTLVPPPVVAEQVSASGSGPTLTTDHQGSSNNRRSPSQSSPTSQDRAGPSELQSFSESLKSKLNAVSSRYKESFSKSTRGWKERWFSRNTSMSDIGTEVRREVNAGIATVSRMMERLETRDGNRSNSNTAPSNLEDGSVQGSRDQHLTETGASQLRDTNTETSCAAGSSSS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60693g00002 392 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Stsc60693g00002 392 SMART ring_2 36 76 IPR001841 -
Stsc60693g00002 392 MobiDBLite consensus disorder prediction 171 312 - -
Stsc60693g00002 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 85 IPR013083 -
Stsc60693g00002 392 MobiDBLite consensus disorder prediction 180 196 - -
Stsc60693g00002 392 MobiDBLite consensus disorder prediction 235 295 - -
Stsc60693g00002 392 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 21 85 - -
Stsc60693g00002 392 Pfam Ring finger domain 35 76 IPR001841 -
Stsc60693g00002 392 MobiDBLite consensus disorder prediction 334 392 - -
Stsc60693g00002 392 FunFam E3 ubiquitin-protein ligase RHF2A 7 110 - -
Stsc60693g00002 392 MobiDBLite consensus disorder prediction 344 392 - -
Stsc60693g00002 392 SUPERFAMILY RING/U-box 29 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60693g00002 Stsc-Chr60693 8661 12455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60693g00002 33 84 C3H Transcription Factor Family AT5G15790 40.385 2.30e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60693g00002 K19043 - gmx:100814908 619.387