Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60692g00003 ATGGAAATTGATCATCTCAACATCACTGAGAGGAACATGAACAACTCTTCTTCGAATTCTTCCGATGACTCTCAAGAGGAGATGACCGGAGAAGCCTACTATTCGGTCTCCTTGTCCCTTGGCTTTCTCCTCCTCATGGCATTCTTTGCTCTCACTGCATACTACTGCAGCAAAAGCAGGCTTCGGAACGGGCGAACCGGACCGAGCTCAGCCAGTAGCAGGTTCAATTCAAACAGGACAGTGATCATGGATAGAGACTCATCATCCATAGCAATCCAAATTGGTGAGGAACAACAACAAATTCAAGAATCAGTCCTCAGAACTTATCCTATGTTGTTGTTCTCCCAAGCCAAGCTTCATCAAAAGGCTAATGATCCAACAGAACTACTCAGTTGCTCAATATGCTTGGCAGATTATGCAGACTCAGAGTGGCTAAGGCTATTGCCTGATTGTGGCCATTTCTTTCATAGGGATTGTATTGATGTATGGTTGAGGCTGAACCTTTCTTGTCCAATGTGTAGGAACTCTCCATTACCAACCCCTCTTGCTGAAGTTACTCCCTTGGCTGCAACAAGGAGTAATTGA 585 0.4496 MEIDHLNITERNMNNSSSNSSDDSQEEMTGEAYYSVSLSLGFLLLMAFFALTAYYCSKSRLRNGRTGPSSASSRFNSNRTVIMDRDSSSIAIQIGEEQQQIQESVLRTYPMLLFSQAKLHQKANDPTELLSCSICLADYADSEWLRLLPDCGHFFHRDCIDVWLRLNLSCPMCRNSPLPTPLAEVTPLAATRSN 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60692g00003 194 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Stsc60692g00003 194 MobiDBLite consensus disorder prediction 1 26 - -
Stsc60692g00003 194 MobiDBLite consensus disorder prediction 8 26 - -
Stsc60692g00003 194 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 178 IPR013083 -
Stsc60692g00003 194 CDD RING-H2_EL5-like 131 174 - -
Stsc60692g00003 194 SUPERFAMILY RING/U-box 115 177 - -
Stsc60692g00003 194 Pfam Ring finger domain 131 174 IPR001841 -
Stsc60692g00003 194 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 183 IPR045899 -
Stsc60692g00003 194 SMART ring_2 132 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60692g00003 Stsc-Chr60692 8426 9149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60692g00003 30 191 C3H Transcription Factor Family AT2G35910 41.566 1.15e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60692g00003 - - adu:107466513 282.722