Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60692g00002 ATGTCCAATTCATCATCAACTTCCCAATCCAATGATGGTTTTGATGCAAGTGGTTTCACATATGGAGTAGCATTTGTACTAGGTTTGATCTTCTTACTTGCTACCATAGCTTTTGCATGTTTTCGCATTCGCAATATTCGAACCCCCAACCTACTGATCAACATTGTGGCCGGTGTTCCGTCGTCGTCACAATCTCACCGAGCACTAGGGCGTCACGTGGCTGAAGCCCTAGAACAGGGGCATCGACACGTAGACGTTCGTATCGACACGAGTTATGAGAATTACCCTAAAATGCCATATTCCGATGAGGTAATGAACAAAAGTAGTGTTGGGGGTGGATGTACAATATGCTTAGGAGATTATAAAGAGAGTGAAATGTTGAGGGTTCTTCCAGGTTGTGGCCATGTCTTTCACCAAGTTTGTGTTGATCCATGGCTCATGTTACATTCAACTTGCCCCATATGTAGAAAATCATTGCCTCAAGAAGCTCCATAG 495 0.4384 MSNSSSTSQSNDGFDASGFTYGVAFVLGLIFLLATIAFACFRIRNIRTPNLLINIVAGVPSSSQSHRALGRHVAEALEQGHRHVDVRIDTSYENYPKMPYSDEVMNKSSVGGGCTICLGDYKESEMLRVLPGCGHVFHQVCVDPWLMLHSTCPICRKSLPQEAP 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60692g00002 164 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 159 IPR045899 -
Stsc60692g00002 164 CDD RING-H2_PA-TM-RING 114 156 - -
Stsc60692g00002 164 SMART ring_2 114 155 IPR001841 -
Stsc60692g00002 164 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Stsc60692g00002 164 Pfam Ring finger domain 114 156 IPR001841 -
Stsc60692g00002 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 162 IPR013083 -
Stsc60692g00002 164 SUPERFAMILY RING/U-box 95 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60692g00002 Stsc-Chr60692 5760 6254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60692g00002 18 163 C3H Transcription Factor Family AT5G06490 32.530 2.14e-24 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60692g00002 - - aip:107616940 203.371