Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60692g00001 ATGTCCAATTCTACTTCTTCCGAAACCAACCATGGTTTTGATGCAACTAGTGGTTTCACATATGGCGTAGCATTCATACTAGGTTTCATCTTCTTACTTGCTACCATAATTTTTGCATGTTTTCGTATTCGCCGCGATACTCGAACTCCTAACATACTCAACATAGTGGCCGGTGTTCCACCGTCATCACAGTTTCACCGAACATTAGAACGCCACGTGGCCGAAGCCCTAGAACAGGGACGTCGACACGTGGACGTTCGTATCGACACGAGTTACGAGAATTACCCTAAGATGCCTTATTCGGATGAGGTAACGAAGAAAAGTAGGGTTGGGGGTGGATGCACAATATGCTTAGGAGATTATAAAGAGAGTGAGATGTTGAGGGTTCTTCCTGGTTGTGGCCATGTCTTTCACCAAGCTTGTGTTGATCCATGGCTCATGTTACATTCAACTTGCCCCATATGTAGAAAATCGTTGCCTCAAGAAGCTCCATAG 495 0.4505 MSNSTSSETNHGFDATSGFTYGVAFILGFIFLLATIIFACFRIRRDTRTPNILNIVAGVPPSSQFHRTLERHVAEALEQGRRHVDVRIDTSYENYPKMPYSDEVTKKSRVGGGCTICLGDYKESEMLRVLPGCGHVFHQACVDPWLMLHSTCPICRKSLPQEAP 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60692g00001 164 CDD RING-H2_PA-TM-RING 114 156 - -
Stsc60692g00001 164 Pfam Ring finger domain 114 156 IPR001841 -
Stsc60692g00001 164 SUPERFAMILY RING/U-box 113 161 - -
Stsc60692g00001 164 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 159 IPR045899 -
Stsc60692g00001 164 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Stsc60692g00001 164 SMART ring_2 114 155 IPR001841 -
Stsc60692g00001 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 162 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60692g00001 Stsc-Chr60692 3463 3957 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60692g00001 14 163 C3H Transcription Factor Family AT5G06490 34.568 6.28e-26 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60692g00001 - - aip:107616940 200.29