Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60691g00008 ATGGGGGGCATGTGTTGCAAGCCCTCTGCCATTGAGGACAGTAAGGAGAGTCCGAGGGAGCGTTTATCCGGCAAGACTGTGTCGGATTTGCGTGTTTCTAGGGGAGCTTCATCCAGGAGGGAGGAATCATATCGAGTGAAGGATAGGTACGATAGCAATGATCCGAGGGTTGGATTGATTGATAAGCAAGGTAATGGAGCCGTTCGGGTGCAAGCTGATAATTATGAGAGGAAGAGGGATAAAATGGAATATGTTGTAGCTCCACATCCGGCAATTGGTACTGTTCCCAAGGCCATGGAAGGAGAGCAGGTTGCAGCTGGATGGCCCTCGTGGCTGGCTGCAGTGGCTGGAGAGGCTATCAAAGGATGGTTGCCCCGGCGCGCAGATTCTTTTGAGAAGTTGGATAAAATTGGCCAGGGAACTTATAGTAATGTTTATAGAGCTCGTGATCTTGAACAAAGAAAGATTGTTGCTTTGAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTTTGCGTAGGCTTGATCATCCAAATGTCATAAAATTGGAAGGCTTGGTTACATCTAGGATGTCTTGCAGCTTATACCTTGTTTTCGAGTACATGGAACATGACTTGGCTGGGCTCGCATCCCATCCAGGACTGAAGTTCACAGAAGCACAGGTTAAATGTTACATGCAGCAACTTCTACGTGGACTTGATCACTGCCACAACTGTGGAGTGCTGCACCGCGACATTAAGGGTTCCAATCTTTTGATTGACAATAATGGAATCTTGAAGATTGCAGACTTTGGTTTGGCAAGCTTTTTTGATCCCAATCAAATTCAACCATTGACAAGCCGAGTTGTCACCCTTTGGTATAGGCCTCCAGAACTTTTGCTTGGAGCCACTTACTATGGAACCGCTGTAGATTTATGGAGTACGGGTTGCATACTTGCCGAATTATATGCTGGCAAGCCAATAATGCCTGGAAGAACTGAGGTGGAGCAATTACATAAAATTTTTAAACTGTGCGGTTCACCATCTGAGGATTATTGGAGAAAGTCAAAGTTACCTCATGCAACAATATTCAAGCCTCAACAGCCCTATAGGCGCTGTGTTTCTGAAACATTCAAGGACTTTCCTGCACCTGCAATACAACTGATAGAGATCCTTCTATCCATAGATCCTGCTGATCGTGGAACTGCAGCATCTGCTTTAAGGAGCGAGTTCTTCTCAATGAAACCTCTACCATGTGATCCTTCAATCTTACCAAAGTATCCTCCTAGCAAAGAGTTTGATGCCAAAGTAAGGGATGAAGAGGCTAGAAGGCAAGGAGCAGCAGGAAACAAGGGTCAGAAACATGACCTTGAGAGAAGAGGTGTAAGAGAATCACGAGCCGTACCTGCACCAGATGCCAATGCTGAACTTGTCTCTTCAATGCAGAAGAGACAAAGTTATGCCAATTCTCAAAGTAGGAGTGAGAAGTTTAACCCTCACCCGGAAGAAGTTGCTTCTGGATTTCCCATTGATCCTCCTAGGCCATCACAAGCTGCAGAAGTAAGTGCAGATCCCCAGGTTCATCAGCACAAAAGAGCCTCCCATTCAGGTCCACTGACTCACCGCGCTGCGTGGGCTAAAGCTGGGAAGAACCAGGATGATGCTCCCAAGATTTCAATGGGGGGTGGCGGTGACTTATCAACAATATCTGGTTTGGTTGCGGCCAGAAGAAGTATGTTGTCTGATGATCGGAGAGAAAGGTCCGGATCATCACAGGCGGAAGCTCCAAAACTAATAACCAGGTTCCCAGGATCCTTCAAAGAAGCCTCTGAATCCTTGATGCAACAGGATCAGAAGCATCATGCACATGCTCCTCAAAAGGAAGAAGGGAGAGTCAACAGCAAAGACCCAGTTCTTGTAAGTTTATTAGAACATTTTTGGTTTATGTTTTTCATTTCTATTAATACTACAAATAGCACCTTGTTTTCAACCCCTTTGTGTCTAGGATTTGGTGAAGAAATCGTTAAAAACAAGAAATATGATTTTTTTCCCCCCTTTTCTTTTCTTTCAATCATTTCCTTCCTAAATCCTGAATAA 2106 0.4482 MGGMCCKPSAIEDSKESPRERLSGKTVSDLRVSRGASSRREESYRVKDRYDSNDPRVGLIDKQGNGAVRVQADNYERKRDKMEYVVAPHPAIGTVPKAMEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQRKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHNCGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPNQIQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVSETFKDFPAPAIQLIEILLSIDPADRGTAASALRSEFFSMKPLPCDPSILPKYPPSKEFDAKVRDEEARRQGAAGNKGQKHDLERRGVRESRAVPAPDANAELVSSMQKRQSYANSQSRSEKFNPHPEEVASGFPIDPPRPSQAAEVSADPQVHQHKRASHSGPLTHRAAWAKAGKNQDDAPKISMGGGGDLSTISGLVAARRSMLSDDRRERSGSSQAEAPKLITRFPGSFKEASESLMQQDQKHHAHAPQKEEGRVNSKDPVLVSLLEHFWFMFFISINTTNSTLFSTPLCLGFGEEIVKNKKYDFFPPFSFLSIISFLNPE 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60691g00008 701 Pfam Protein kinase domain 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60691g00008 701 MobiDBLite consensus disorder prediction 481 498 - -
Stsc60691g00008 701 MobiDBLite consensus disorder prediction 616 635 - -
Stsc60691g00008 701 CDD STKc_CDK9_like 131 415 - -
Stsc60691g00008 701 PANTHER CELL DIVISION PROTEIN KINASE 129 421 - -
Stsc60691g00008 701 SMART serkin_6 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60691g00008 701 FunFam probable serine/threonine-protein kinase At1g54610 118 213 - -
Stsc60691g00008 701 MobiDBLite consensus disorder prediction 426 542 - -
Stsc60691g00008 701 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Stsc60691g00008 701 FunFam probable serine/threonine-protein kinase At1g54610 214 455 - -
Stsc60691g00008 701 MobiDBLite consensus disorder prediction 580 635 - -
Stsc60691g00008 701 MobiDBLite consensus disorder prediction 549 568 - -
Stsc60691g00008 701 SUPERFAMILY Protein kinase-like (PK-like) 125 422 IPR011009 -
Stsc60691g00008 701 MobiDBLite consensus disorder prediction 434 469 - -
Stsc60691g00008 701 ProSiteProfiles Protein kinase domain profile. 131 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60691g00008 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Stsc60691g00008 701 MobiDBLite consensus disorder prediction 1 47 - -
Stsc60691g00008 701 Gene3D Transferase(Phosphotransferase) domain 1 214 454 - -
Stsc60691g00008 701 MobiDBLite consensus disorder prediction 12 27 - -
Stsc60691g00008 701 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60691g00008 Stsc-Chr60691 56134 61306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60691g00008 123 472 Core Cell Cycle Gene Families AT5G10270 51.093 8.42e-117 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Stsc60691g00008 Pkinase 2.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60691g00008 - - gmx:100792173 1187.94