Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60690g00002 ATGTCAACTGCACCCGCCCCTTCTTCGCCGCCGGCGGGTAACTCTACCGCCCCGCCGCCATCCACTCCCGCCACGCCTTCTGCTCCTGCGCCAACCACTCCATCAAATCCGCCGCCGGCTACTCCCTCCTCGCCGCCACCTGCCACTCCTTCCTCCCCGCCGCCGTCTACTCCATCTTCGCCACCTCCGGCAACACCCTCAGCTCCACCTCCGGCCACTCCATCTGCCTCTCCGCCGCCGGCAACTCCATCAACTCCTGCAACTCCTTCAACGCCGTCTACCTCGCCTCCGAAAACATCTCCCGCCACTCCATCGACATCTCCGCCGTCGCCGCCGTCTCCGTCTTCCGGCGGAAGCACCACTCCCAGTCCACCTTCTCGTGGCTCTCCTTCTCCCCCATCTTCCGGTGGCAAAACGCCATCTTCGTCCAAGTCTCCACCGTCGTCGTCCAACTCCCCATCGCCACCTGGATCGTCTTCATCGGGCATTTCCACCGGAGTTGTGGTCGGAATCGCCGTTGGTGCTGTAGCAGTTCTTGTGGTACTGAGCGTTCTCTGCATATGCTGCAGGAAGAAGAAGAGAAGACGCGACGAGGAGCACTACTACGGTTACCCACCGCCTCAGCAGCCGCCACGTGGACCCAAAGATAACTATGGTGGTCCCCCACAACAGTGGCAGCACAATGCTCCACCTCCTTCAGATCACGTGGTCTCCGTCCAGCCACCGAAGCCATCGCCTCCGCCTCCGCCTCCGCCGGTATACCAACCTCCACCACCGCCTCCACCTTTCATGAGCAGCAGTGGCGGTTCTGGATCAAACTATTCAGGTGGTGAGCCACTTCCACCTCCTTCTCCAGGCATTGCATTAGGCTTCTCAAAGAGCACTTTCACATACGAGGAGCTGGCGCGAGCAACCGATGGATTCTCCGACGCCAACCTCCTTGGATCAGGCGGATTCGGGTATGTGCATAGGGGAATCCTTCCCAACGGTAAGGAGGTGGCGGTGAAGCAGCTGAAGGCCGGAAGCGGGCAAGGAGAGCGTGAATTCCAAGCTGAAGTAGAGATAATCAGTCGTGTTCATCACAAGCACCTTGTTTCTTTGGTTGGATACTGCATCACCGGGACCCAGAGGCTGCTTGTTTATGAATTTGTCCCCAACAACACGTTGGAATTCCATTTACATGGGAGAGGCCGACCAACAATGGATTGGCCCACAAGACTTCGAATTGCTTTAGGATCTGCTAAAGGGCTGTCATATCTTCATGAGGATTGCCATCCTAAGATCATTCATCGAGATATCAAATCTGCTAACATTCTTCTCGATTTTAAGTTTGAAGCTAAGGTTGCTGATTTCGGGCTTGCAAAGTTCTCTTCTGATGTTAACACTCATGTTTCCACCCGAGTGATGGGGACGTTCGGGTATCTGGCTCCGGAATATGCTTCCAGTGGAAAACTCACAGACAAATCAGATGTTTTCTCCTATGGAGTCATGCTTCTTGAGTTAATTACTGGAAGAAGGCCTGTTGATAAAAACCAAACTTTCATGGAGGATAGTTTGGTAGACTGGGCTAGGCCTTTGCTCAACCGTGCCTTGGATGAAGATGATTATGACTCTCTAGTTGACCCAAGGCTCCAGAATGAATATGATCCCAATGAGATGGCTCGCATGGNNNNNNNNNNGTGCCGCTGCTTGCACGCGTCATTCAGCAAAGCGTCGACCAAGGATGAGCCAGGTTGTTCGAGCTCTCGAAGGAGATGTGTCTCTAGCAGATCTCAATGA 1779 0.5441 MSTAPAPSSPPAGNSTAPPPSTPATPSAPAPTTPSNPPPATPSSPPPATPSSPPPSTPSSPPPATPSAPPPATPSASPPPATPSTPATPSTPSTSPPKTSPATPSTSPPSPPSPSSGGSTTPSPPSRGSPSPPSSGGKTPSSSKSPPSSSNSPSPPGSSSSGISTGVVVGIAVGAVAVLVVLSVLCICCRKKKRRRDEEHYYGYPPPQQPPRGPKDNYGGPPQQWQHNAPPPSDHVVSVQPPKPSPPPPPPPVYQPPPPPPPFMSSSGGSGSNYSGGEPLPPPSPGIALGFSKSTFTYEELARATDGFSDANLLGSGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGTQRLLVYEFVPNNTLEFHLHGRGRPTMDWPTRLRIALGSAKGLSYLHEDCHPKIIHRDIKSANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELITGRRPVDKNQTFMEDSLVDWARPLLNRALDEDDYDSLVDPRLQNEYDPNEMARMXXXXCRCLHASFSKASTKDEPGCSSSRRRCVSSRSQ 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60690g00002 592 Pfam Protein tyrosine and serine/threonine kinase 313 511 IPR001245 GO:0004672|GO:0006468
Stsc60690g00002 592 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Stsc60690g00002 592 Gene3D Transferase(Phosphotransferase) domain 1 384 575 - -
Stsc60690g00002 592 MobiDBLite consensus disorder prediction 199 289 - -
Stsc60690g00002 592 SUPERFAMILY Protein kinase-like (PK-like) 285 565 IPR011009 -
Stsc60690g00002 592 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Stsc60690g00002 592 MobiDBLite consensus disorder prediction 11 131 - -
Stsc60690g00002 592 FunFam proline-rich receptor-like protein kinase PERK1 286 383 - -
Stsc60690g00002 592 MobiDBLite consensus disorder prediction 1 167 - -
Stsc60690g00002 592 MobiDBLite consensus disorder prediction 235 265 - -
Stsc60690g00002 592 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 174 567 IPR047117 -
Stsc60690g00002 592 SMART serkin_6 308 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60690g00002 592 FunFam Proline-rich receptor-like protein kinase PERK4 384 576 - -
Stsc60690g00002 592 ProSiteProfiles Protein kinase domain profile. 308 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60690g00002 592 CDD STKc_IRAK 314 567 - -
Stsc60690g00002 592 MobiDBLite consensus disorder prediction 573 592 - -
Stsc60690g00002 592 Gene3D Phosphorylase Kinase; domain 1 288 383 - -
Stsc60690g00002 592 MobiDBLite consensus disorder prediction 132 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60690g00002 Stsc-Chr60690 12890 16402 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60690g00002 130 567 Trihelix Transcription Factor Family AT1G70460 53.303 3.63e-155 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc60690g00002 PK_Tyr_Ser-Thr 9.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60690g00002 - - gmx:100781944 633.639