Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60688g00007 ATGTCTTCTTCTTCATCTTCCTCAACCTCGTCATCAGAACCAGATCACAGAGGAGGAGGAGCAGCAGCAGCAACAGCATACAGCACACCACCAGTACTCATAGCCTTCGTCCTCGTCCTCCTCGTCATCTGCTTCGTCTGCTTCACCCTCATCTACTTCTGCCGCTGCTACTTCGTCAGCATCATCCACACCCTCGCCTTCCACCGCTCCCCCTCCGCTACCGCCACCGCCGCTGCCGCCACCGCTAACTCCATCAACAACGCTCCCAATTCCCCCTTCATGGGCCTCGACACTGCCCTCCTTGAGGAATTCCCCACGTTCCCTTATTCCTCCGTGAAGGATCTCCGAAAAGAGAAGAAGTACGGCCTGGAATGCGCCATCTGTCTGTTGGAGTTCGAGGACGACAGCGTTCTCCGGTTGCTCACCGTTTGCCGCCACGTGTTCCACCAGGAGTGCGTTGATCTCTGGCTCCATCGCCACAAGACATGCCCCGTTTGCCGCACCGATCTTGAAACCAGAAAGTCTTCTTCTTCTTCTTCTGCTTCTCCTTCTGACATTCACGATCATGAAAGGCAGAGTGTTGCTGCTGGAGGAGAAGAAGACGGTAACGCTGATGATGTCTGCATTGACGTGAAAGAAGGCGGGGATGAGGATGGTAATAATAGATTCCTCCGGTCGCATTCCACCGGGCATTCAATAGTTATGGTTAGAGAAGAAGGAAGAGATGAGGATGATGATAGGTATAGGTTGAAGTTGCAGCAGGATGCAGATTTGAGGATTGTTAAGAATGAGATGAAGAAGAATAATCATCACCAGTACTCGAGGAGCTGTGAGAGTTACACGGAGATGATGATGACGATGATGATGGCGGCGAAGCCCCTTGTTCCTCCTTGTACCAACTGTGGTTATGTTGATCATCAAACTCTCTCCTCTTCTGCTCCTTGTTCTTCGCGTCTTGGTGCTGCTAACTGA 972 0.5175 MSSSSSSSTSSSEPDHRGGGAAAATAYSTPPVLIAFVLVLLVICFVCFTLIYFCRCYFVSIIHTLAFHRSPSATATAAAATANSINNAPNSPFMGLDTALLEEFPTFPYSSVKDLRKEKKYGLECAICLLEFEDDSVLRLLTVCRHVFHQECVDLWLHRHKTCPVCRTDLETRKSSSSSSASPSDIHDHERQSVAAGGEEDGNADDVCIDVKEGGDEDGNNRFLRSHSTGHSIVMVREEGRDEDDDRYRLKLQQDADLRIVKNEMKKNNHHQYSRSCESYTEMMMTMMMAAKPLVPPCTNCGYVDHQTLSSSAPCSSRLGAAN 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60688g00007 323 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Stsc60688g00007 323 MobiDBLite consensus disorder prediction 1 15 - -
Stsc60688g00007 323 MobiDBLite consensus disorder prediction 1 20 - -
Stsc60688g00007 323 FunFam E3 ubiquitin-protein ligase ATL6 85 173 - -
Stsc60688g00007 323 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 174 IPR013083 -
Stsc60688g00007 323 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 14 281 - -
Stsc60688g00007 323 SMART ring_2 125 166 IPR001841 -
Stsc60688g00007 323 SUPERFAMILY RING/U-box 108 173 - -
Stsc60688g00007 323 MobiDBLite consensus disorder prediction 172 211 - -
Stsc60688g00007 323 Pfam Ring finger domain 124 167 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60688g00007 Stsc-Chr60688 45146 46117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60688g00007 29 269 Rapid Response to Elicitors AT3G05200 34.496 1.44e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60688g00007 - - ahf:112747412 465.307