Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60688g00006 ATGGCCTTATTAGAACCTCATCATCATCTTTCATCATCAAATGAGTTTCCCAACTTCGTAGTCTATGATACTATCTCTGCAACCCCCTTTAGCAGTAGCCATGGAAGTTCATCAGGGATGAGCAGTACCAGCTTCTTGGTAGAAGAAAACAAGGTTGAGTATAATGGAGGGAGGACAACAAGAAAACGGCAATCTGGTGAAGCAGAAAGAGGGAAGAATAAGAAGAGGAGGAGAAAGCCAAGGGTATGCAAGAACAAGGAAGAGGCTGAGAATCAAAGAATGATCCACATTACTGTGGAGAGGAACAGAAGGAAGCTCATGAATGAGCACCTTGCTGTTCTTCGCTCACTCATGCCTGAATCCTACGTCCAAAGGGGTGATCAAGCATCAATAGTAGGTGGAGCTATAGAATTTGTGAAGGAACTGGAGCACCTGTTGCAGTGCCTTGAGGCTCAAAAGTTGAAGCTTGTACATCAAGGAATGGCAGCACAACAATCCATCAATAATGAAGATGCTATTTCCAATAATAATGAGATGATGATGATGATGATGGGATCAGCCCCTTTTTCACATTTCTTTGTGCATCCTCAGTTCACTTGGTCTCAGGCTGCAAAAAAATATGCTTCTTCTTCCCATCAGAATCAGAATAATAATAATAATCAAGGTGCAGCCATGGCTGACATTGAGGTCACTTTGATTGAAAGCCATGCAAACCTTAGAATCCTGTCAAGGAAAAGCCCCAGGCAACTTTCAAAGTTGCTTTCTGGTTTTCAAAATCTCTGTCTCACCATTTTGCATCTCAATGTCACCTCCATGGACCCCTTAGTACTCTATTCCATTAGCGCCAAGGTTGAAGAAGGATGCCAACTTAGTTCAGTAGATGACATTGCAAGTGCTGTTCACAACTTGCTTAGAATGATTGAAGAAGAGGATTCCCTTTGCTGCAGTTTATACGGTGAAGTTACCAAATCAACCCCCTCCCCTCTTCAACACTGA 996 0.4267 MALLEPHHHLSSSNEFPNFVVYDTISATPFSSSHGSSSGMSSTSFLVEENKVEYNGGRTTRKRQSGEAERGKNKKRRRKPRVCKNKEEAENQRMIHITVERNRRKLMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLLQCLEAQKLKLVHQGMAAQQSINNEDAISNNNEMMMMMMGSAPFSHFFVHPQFTWSQAAKKYASSSHQNQNNNNNQGAAMADIEVTLIESHANLRILSRKSPRQLSKLLSGFQNLCLTILHLNVTSMDPLVLYSISAKVEEGCQLSSVDDIASAVHNLLRMIEEEDSLCCSLYGEVTKSTPSPLQH 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60688g00006 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 164 IPR036638 GO:0046983
Stsc60688g00006 331 Coils Coil 139 159 - -
Stsc60688g00006 331 SMART finulus 97 148 IPR011598 GO:0046983
Stsc60688g00006 331 PANTHER MAX DIMERIZATION, MAD 29 312 - -
Stsc60688g00006 331 Gene3D - 83 159 IPR036638 GO:0046983
Stsc60688g00006 331 MobiDBLite consensus disorder prediction 54 71 - -
Stsc60688g00006 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983
Stsc60688g00006 331 MobiDBLite consensus disorder prediction 52 89 - -
Stsc60688g00006 331 Pfam Helix-loop-helix DNA-binding domain 92 143 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60688g00006 Stsc-Chr60688 39195 40383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60688g00006 83 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 51.980 3.78e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc60688g00006 HLH 3.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60688g00006 - - aip:107642328 494.197