Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60688g00005 ATGGCATCTCTTGGCAACCCAAGAACTTGGGTTCCATATGTGAACAGTAAAGACTGTTCTCAAGGATTTTGCAGCCTGTACTGTCCACAGTGGTGTTATGCAGTGTACCCTCCTCCTCCTCCTCCTCCTCCATTTGAATTCCCTGATGAAGATTCAGGTCCGAATTTCTCACCTCTTGTTATTGCAATCATTGGAGTGTTGGCAAGTGCTTTCCTCCTTGTGAGTTACTACACCATAATTTCCAAGTACTGTGGCAGAAGAGAATCATCCTCAGAAGGACATGAAGAAGAAGCAACAAATGTTGAGATTTTGGAAGATAATCACAACCCTTCACTCCATGAGCCATGGCATGCCTCAACAACTGGCCTAGATGAGGCACTCATCAAGACTATAACTGTTTGCAAGTACAAGAAAGGCGAAGGACTCGTTGAGGTAACAGATTGTTCTGTTTGCCTCAGCGAGTTCCAAGATGGTGAGAGCATTCGGCTCTTGCCAAAGTGTAGCCATGCTTTTCACATTCCTTGCATTGATACATGGCTCAAGTCTCACTCCAATTGCCCTCTTTGCCGGGCCACGCTTTTCACCTTTAATGCTGCAGCTCCATTTCATGCACCGCAGCCGGCACCCCAAGTGCTGGAACTAGCTTCATCAAGAAATGAAGGCTCTTCAGAGAATGTGGCTAATGTAGATGACAATGTGGAGAATGGAAGAAGGGACAGTGATGAATTATTGGATGTGGTGTTGGAAGAAGGGGCATTGAATGGTAACAGAGAAGTCCCCAAGACTAATGCATTGCGCGCATTCAGTGACTTGGGGAATTTCAGGGGAAGGCATGTTGTGATTAGAGATGAGGATGACTATGAATCAGTAAGAAGATCAGTGTCTATGGATCATTCCTTTCAAAATGGTGTTACACTTTCAGTAGCTGATGTTCTTCACATGAACCATGATCAAGATTCAAATGAAGAAGCTAGCACTTCAAAGAGATCATCGTCGTCATCATCATCATCAAGGGGTGAAGGTAGCAAATCAAGTTATAGAAGAAGGGTGTTGCATTGTGTTATGAGTCCAATTTCAATGAAGAGATCATTCTCAAATGGAAGATTCTCACTTAGTGGCAGAAATGGCAGGGGAAGGCAGGGGATTTTACCTATATGA 1158 0.4413 MASLGNPRTWVPYVNSKDCSQGFCSLYCPQWCYAVYPPPPPPPPFEFPDEDSGPNFSPLVIAIIGVLASAFLLVSYYTIISKYCGRRESSSEGHEEEATNVEILEDNHNPSLHEPWHASTTGLDEALIKTITVCKYKKGEGLVEVTDCSVCLSEFQDGESIRLLPKCSHAFHIPCIDTWLKSHSNCPLCRATLFTFNAAAPFHAPQPAPQVLELASSRNEGSSENVANVDDNVENGRRDSDELLDVVLEEGALNGNREVPKTNALRAFSDLGNFRGRHVVIRDEDDYESVRRSVSMDHSFQNGVTLSVADVLHMNHDQDSNEEASTSKRSSSSSSSSRGEGSKSSYRRRVLHCVMSPISMKRSFSNGRFSLSGRNGRGRQGILPI 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60688g00005 385 MobiDBLite consensus disorder prediction 365 385 - -
Stsc60688g00005 385 MobiDBLite consensus disorder prediction 317 348 - -
Stsc60688g00005 385 MobiDBLite consensus disorder prediction 325 341 - -
Stsc60688g00005 385 FunFam RING-H2 finger protein ATL54 123 196 - -
Stsc60688g00005 385 CDD RING-H2_EL5-like 147 190 - -
Stsc60688g00005 385 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Stsc60688g00005 385 SUPERFAMILY RING/U-box 147 196 - -
Stsc60688g00005 385 PANTHER RING-H2 FINGER PROTEIN ATL16 43 343 IPR044600 GO:0016567|GO:0016740
Stsc60688g00005 385 SMART ring_2 148 189 IPR001841 -
Stsc60688g00005 385 Pfam Ring finger domain 147 190 IPR001841 -
Stsc60688g00005 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 196 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60688g00005 Stsc-Chr60688 33390 34823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60688g00005 1 344 C3H Transcription Factor Family AT3G03550 41.176 2.13e-68 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60688g00005 - - adu:107487194 653.669