Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60688g00004 ATGGCGGCAACATCATTAGACTCAGCACTCTCCATATTGGCATCTCACTCCCACCCTTTCACTCGTCTATCTCCAAAACCACCAGACTCCATTAAACTCCACACCTCCCTCTCTCCTCTCTCCTTCTCCTTCTCTTTCAATGCCTCCACACCAAAACCATTCTCCTCCTTCTGCTGCACATTGCAACAACAACAACAACCCACCACCACCAACGCGAAGAAGAAGCTCTTTGTCTTTAACTTACCCTGGTCCATGTCCGTTGCCGACATCAAAGACCTCTTTTCCCAATGCGGAACTGTAACCGACGTCGAGATCATAAAGAACAAGGAAGGCAGAGGCAGGCGTTTTGCCTTCGTTACTATGTCTTCTGGTGAACAAGCTCTTGCTGTCCTTCAAAAGTTCAATTCTTATCAAATATCAGGAAGGGAAATAAGGGTTGAGCTTGCAAAGAGATTCAAGAAGCCGCCTCCTCCTACACCACCGTCTTCTAGTCCCCCTCCAGGCGAGACACGTCACGTGGTATATGTAACCAACCTTGCATGGAAAGTAAGATCACCCCAACTCAGACAATTCTTCACTGATAATTTCAAAACACCGGTTTCCTCCAGGGTTGTTTTTGACAGCCCTGCCGGAAGATCTGCAGGGTATGGATTTGTTTCTTTCCTCACAAAAGAGGATGCTGAGGCTGCAATTTCTGCTTTGGATGGCAAGGAATTAATGGAGCGACCACTTCGCCTTAAGTTGAGTGAAAAGAAAGTCAAAGAAGCTCCAACTGAAAAGGAGGAAGACCAGGAAGCTCCTCAATTGGATCAAGAGAAACTCAAAGAAGCTGCAACTGAAAAGGAGGAAGCCCATGATAATGATGCTCAGCTGCAACAATCATAA 885 0.4644 MAATSLDSALSILASHSHPFTRLSPKPPDSIKLHTSLSPLSFSFSFNASTPKPFSSFCCTLQQQQQPTTTNAKKKLFVFNLPWSMSVADIKDLFSQCGTVTDVEIIKNKEGRGRRFAFVTMSSGEQALAVLQKFNSYQISGREIRVELAKRFKKPPPPTPPSSSPPPGETRHVVYVTNLAWKVRSPQLRQFFTDNFKTPVSSRVVFDSPAGRSAGYGFVSFLTKEDAEAAISALDGKELMERPLRLKLSEKKVKEAPTEKEEDQEAPQLDQEKLKEAATEKEEAHDNDAQLQQS 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60688g00004 294 Coils Coil 274 294 - -
Stsc60688g00004 294 MobiDBLite consensus disorder prediction 249 288 - -
Stsc60688g00004 294 SMART rrm1_1 75 147 IPR000504 GO:0003723
Stsc60688g00004 294 SMART rrm1_1 173 247 IPR000504 GO:0003723
Stsc60688g00004 294 MobiDBLite consensus disorder prediction 249 294 - -
Stsc60688g00004 294 SUPERFAMILY RNA-binding domain, RBD 61 164 IPR035979 GO:0003676
Stsc60688g00004 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 174 245 IPR000504 GO:0003723
Stsc60688g00004 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 145 IPR000504 GO:0003723
Stsc60688g00004 294 Gene3D - 155 266 IPR012677 -
Stsc60688g00004 294 Gene3D - 59 154 IPR012677 -
Stsc60688g00004 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 251 IPR000504 GO:0003723
Stsc60688g00004 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 151 IPR000504 GO:0003723
Stsc60688g00004 294 PANTHER OS02G0815200 PROTEIN 27 252 - -
Stsc60688g00004 294 SUPERFAMILY RNA-binding domain, RBD 155 254 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60688g00004 Stsc-Chr60688 27968 29953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60688g00004 75 278 Eukaryotic Initiation Factors Gene Family AT4G34110 24.878 3.20e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60688g00004 - - lang:109349094 291.967