Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60687g00002 ATGGAAACGACGTCGCAGGCAGACCTCCACCAACCCCCGCTCAGTCCCGCCCTCAATCTCCCCCTTGAGAACGGCGGGCCTCGGGAATCGCACCATGACGACCGCTGCGCCAAGAAGCCCAAGCTCGACGGCGGTGACAGTGGAGGAGGAGGGGAATTGAAGAGAGTCGCGGAGATTGTGCTTGTTTTGTCGACCATGGCGACGATGCGGGCGGGTCGAAAACCTACCGACGTGGAGGTGGAGCTCATGAAGGAGGCTCGGAGCAAGCTCGCCGAGCTCTGTGCAGGGCTCGCGCCGAAGGATATCGTTGCGAGGGAGGCGATTGGGACGGTGATTGAGGATCTTGGATTGAACGGCAAGGTTAAGGATCAGAGGTTAGGGTTTCGAACTCCAAAGATGTCAATTGCTGAGAGGTATACTCATGCTAAGTGGAAGATGGAAGAAGCAAAGAAGTTTGCTGCACCTTCTTCAACTTATACATCTCAGCCTGTCCAACCAAGTACCAGTGTAACAGCTGACAACCGTGTGCCCCCACATGGTGTTCGTGTGTTTGCACCTGATAAATCAAGCCACATTGCGACTCCTTCTTCAGCAACAACAGTGTCTATTCCTGCTCATGTTTCTGCAGGATCGTCTGCTGCACCGCAATATCAGTCGACTAGCAATGAAGTAAGACCACCTATGGTTTCTGGTGCAATGGCTAGCACTCACCTTGGCAGAAATTCATCTCCGATGGTAGTGCCTAAACTTGAACACCCACAGGTCAAAACTGATGGAGGATCAAATGGGTCTTCTTACATGCTTAATGTACCAGCAAATTCTTCAGCAAACCAACCTTTGGCAAATGTTCCACCATGGTCAACACAGACTCAATCTGCGTCATTAGCTAGAAGTGCATTGGAAAACAAGGTGCCTGCTCATAACACTGTCAAGGTACAAGGAACAGGTGATGTATCTGCTTCAAGGGCAGGTTCACAAATAACAACAGATCAGAGCTTTAGGCCATTTATTACTCAAACAGCACCTGTAAACTTGTCTAGTATGCAACAGTCTTTCCAGGGTGTGAACATTGCTCAGCCTCCTTCAATTCCTAATCATGCTGATATTGCAAAGATTGTCCAGAAATTGTTACAACCAAAGCTTCCTGAACATCCGACATGGACTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGTCAGGTGTGTGAACTCACTGTCAATGAGGTTGATACTGTGCTTCTCTGTGATGCTTGTGAAAAGGGATATCACTTAAAGTGCCTGCAGCCATCGATTTTAAGAGGAATTCATAATAGAGTGGATTGGCATTGCATGCGGTGTTTGAGTTTAAGCGGCGGAAAGCCTTTACCTCCAAAATATGGTCGTGTCATGAGATCATCCAACACTCCGCCTAAATTGCCTGCTAATACGGTTGGAGTTCAACAGCCTTCTGAGAAGAAAACAGGGAGCTTAGATCCAAAGGTCAGCCAGCAGAATTTAACAACAAATGGGAGCACTGTTCCAACAGTTGCTACCAGCAGCGTCAAAGTTGAGCCACCATCCGATTCAAAGACTCTTGGTACAAAAGATACACACGGTACTGGAGCATCCAACACAGAACATATTGATCAGAAGCCTGATCCAAACATCCCTATGAAATCCCTCAATGCAGCTTCTGTTCCTTCCTTTGACTTTACTGGTGAAAGTTCTGTTCAACAAGTTAATCCTGAGCCTCCAACCTGTAAAGAGACTTCAACATCCAAAGAGTGTTTAGATTCCAAGAGCATTCCTACATTATCTGATCCAGGTAAGTGTGACAATCTGCTATCATCACAAGACTTTCAAACTGAGCAGAAAGTGGTACAGGGGAAATCTGTAGTATTATCAGATAAAAATGTTGACAGTAGTTTAATGAGTAAGGAACAAAAGGAATCACACACAGGAGAAAGCTTAACTTATGATACCAAGCGAGATGGCCAAGATGTTGCACTAGCAAACTTTGATGGGAGTTCTGGAACTAATGCTGAAGTTAGACAAAACGCTGTGTTATCTTCAGATAGCTCACAAGCTGTAGAATGGATTGGTGATGTTATACAAGAAGTTGATCAGAAAAAGTTTTACCAATCTTGCTGTGTTGATGGGGTAACCTATAGGCTTCATGGTCATGCTCTTCTCCCATCTGGCCATGGCAAATTAGCACCTTCTAAACTTCAGTCTATGTGGGAAGATTGTATAACTGGCATGAAGTGGGTTAAGGTGACGAAATGCTACTTTCCTGATGATTTGCCAGGGGGTCATCCATGTATATCCGAAGTTAATAATGAGGTTTATGAATCTAATAGTGATAGAACTGAATTGGCTAGCTCTATTCGAGGTCCGTGTGAAGTCCTTCCGTCTGATAAATTTAATCAAGAAAATGACAGACGAAATCAGTTAGGAAGTGAGGCAGGTGGTAGAATCCAACCACTTTTTGTTTGCAGGTGGTTTTATGATGAAATCAAAAAATTATTTCAGCCTGTTACCAGTTGA 2532 0.4506 METTSQADLHQPPLSPALNLPLENGGPRESHHDDRCAKKPKLDGGDSGGGGELKRVAEIVLVLSTMATMRAGRKPTDVEVELMKEARSKLAELCAGLAPKDIVAREAIGTVIEDLGLNGKVKDQRLGFRTPKMSIAERYTHAKWKMEEAKKFAAPSSTYTSQPVQPSTSVTADNRVPPHGVRVFAPDKSSHIATPSSATTVSIPAHVSAGSSAAPQYQSTSNEVRPPMVSGAMASTHLGRNSSPMVVPKLEHPQVKTDGGSNGSSYMLNVPANSSANQPLANVPPWSTQTQSASLARSALENKVPAHNTVKVQGTGDVSASRAGSQITTDQSFRPFITQTAPVNLSSMQQSFQGVNIAQPPSIPNHADIAKIVQKLLQPKLPEHPTWTPPSRDYMNKALTCQVCELTVNEVDTVLLCDACEKGYHLKCLQPSILRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPKLPANTVGVQQPSEKKTGSLDPKVSQQNLTTNGSTVPTVATSSVKVEPPSDSKTLGTKDTHGTGASNTEHIDQKPDPNIPMKSLNAASVPSFDFTGESSVQQVNPEPPTCKETSTSKECLDSKSIPTLSDPGKCDNLLSSQDFQTEQKVVQGKSVVLSDKNVDSSLMSKEQKESHTGESLTYDTKRDGQDVALANFDGSSGTNAEVRQNAVLSSDSSQAVEWIGDVIQEVDQKKFYQSCCVDGVTYRLHGHALLPSGHGKLAPSKLQSMWEDCITGMKWVKVTKCYFPDDLPGGHPCISEVNNEVYESNSDRTELASSIRGPCEVLPSDKFNQENDRRNQLGSEAGGRIQPLFVCRWFYDEIKKLFQPVTS 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60687g00002 843 MobiDBLite consensus disorder prediction 459 603 - -
Stsc60687g00002 843 CDD BAH 715 842 - -
Stsc60687g00002 843 ProSiteProfiles BAH domain profile. 716 842 IPR001025 GO:0003682
Stsc60687g00002 843 MobiDBLite consensus disorder prediction 637 654 - -
Stsc60687g00002 843 ProSitePatterns Zinc finger PHD-type signature. 401 448 IPR019786 -
Stsc60687g00002 843 MobiDBLite consensus disorder prediction 470 545 - -
Stsc60687g00002 843 SUPERFAMILY FYVE/PHD zinc finger 391 456 IPR011011 -
Stsc60687g00002 843 MobiDBLite consensus disorder prediction 26 42 - -
Stsc60687g00002 843 MobiDBLite consensus disorder prediction 156 174 - -
Stsc60687g00002 843 Pfam PHD-finger 401 449 IPR019787 -
Stsc60687g00002 843 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 21 842 - -
Stsc60687g00002 843 SMART PHD_3 400 449 IPR001965 -
Stsc60687g00002 843 MobiDBLite consensus disorder prediction 556 595 - -
Stsc60687g00002 843 Gene3D - 685 843 IPR043151 -
Stsc60687g00002 843 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 390 462 IPR013083 -
Stsc60687g00002 843 ProSiteProfiles Zinc finger PHD-type profile. 398 451 IPR019787 -
Stsc60687g00002 843 MobiDBLite consensus disorder prediction 633 654 - -
Stsc60687g00002 843 MobiDBLite consensus disorder prediction 156 178 - -
Stsc60687g00002 843 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60687g00002 Stsc-Chr60687 6886 12005 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc60687g00002 PHD 1e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60687g00002 - - aip:107609239 1500.34