Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60681g00006 ATGGAAAATGGGCATAGCTCAAAATTTGAACTTGTTGTGAGGCAAATAGGAGAACCAATTAGAGTGAAGCCTTCAAAAGAAACAAAGAAGGGGCTCTATTACCTTTCAAACCTTGACCAGAACATTGCTGTTCCAGTGAGAACAGTTTATTGCTTCAAATCAAGTTCAAGGGGGAATGAAGAAGCTCCAAGAGTAATCAAAGATGCACTCTCAAAGATTCTTGTCCCTTATTACCCCATGGCAGGTACCTTGATTCTAAGCAAAGAAGGGAAGCTTATAGTGGATTGCACAGAAGAGGGTGCAGTGTTCCTTGAGGCTGAAGCAGAGTGTGATATTGAAGACATTGGAGATTTAACAAAACCAGATCCTCATAATCTTGGAAAACTTGTTTATAGTGTTCCTGGTGCCAAAAACATTCTTGAGATGCCTCTTATGACTGCACAGGTGACAAAGTTCAAATGTGGAGGGTTCAGTTTGGGACTGAACATGATCCATTGCATGAAAGATGGATTATGTGCCATGGAATTTGTGAATGCATGGAGTGATGTAGCAAGAGGCTTGAGCTTGAAGGTTCCTCCATATCTCGACCGATCGATACTCAAAGCGCGCGACCCTCCCAAGATCGAATTCGAGCACAAAGAATTCGAGCAAATAGAAGACATATCAAACACTAACAAGCTCTATGAAAAAGAAGAGATGATCTACAAAGCATTCACCTTTGACCCTGAAAAGTTAGAACGCCTTAAGAAAATGGCTACCCGAGATGGGGTTTTAAAGAAATGCACAAGCTTTGAAGCTCTCTCAGGGTTTGTATGGAGGGCAAGAAGTGAAGCCTTAAGAATGAAACCTGATCAAAAGACAAAATTGCTCTTTGCAGTTGATGGAAGGTCCAAGTTTGTTCCACCAATACGTGAGGGGTATTTTGGGAATGCTATTGTTCTAACAAACTCTCTTTGCAAGGCTGGTGAATTACTAAATTGCCCTTTGTCACATTCAGTGGGTTTGGTTCACAAGGCAATTGAGATGGTGAATGATAGTTATATGAGATCAGCAATTGATTATTTTGAAGTCACAAGAGAAAGGCCTTCTTTGGCAGCTACACTTTTGATCACAACTTGGACAAAGTTGTCATTTCACACCACAAATTTTGGTTGGGGTGATCCTTTGTGTTCTGGGCCTGTTACTTTGCCTGAGAGAGAAGTTGTTTTGTTCTTGTCTCATGGCCATGGAAGGAGAAGTGTTAATGTTCTTATGGGCTTGCCTGCTTCTGCCATGAACACTTTTGAGGAATTGGTTAACCAAGTTTGA 1308 0.4121 MENGHSSKFELVVRQIGEPIRVKPSKETKKGLYYLSNLDQNIAVPVRTVYCFKSSSRGNEEAPRVIKDALSKILVPYYPMAGTLILSKEGKLIVDCTEEGAVFLEAEAECDIEDIGDLTKPDPHNLGKLVYSVPGAKNILEMPLMTAQVTKFKCGGFSLGLNMIHCMKDGLCAMEFVNAWSDVARGLSLKVPPYLDRSILKARDPPKIEFEHKEFEQIEDISNTNKLYEKEEMIYKAFTFDPEKLERLKKMATRDGVLKKCTSFEALSGFVWRARSEALRMKPDQKTKLLFAVDGRSKFVPPIREGYFGNAIVLTNSLCKAGELLNCPLSHSVGLVHKAIEMVNDSYMRSAIDYFEVTRERPSLAATLLITTWTKLSFHTTNFGWGDPLCSGPVTLPEREVVLFLSHGHGRRSVNVLMGLPASAMNTFEELVNQV 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60681g00006 435 Gene3D - 216 435 IPR023213 -
Stsc60681g00006 435 Gene3D - 15 215 IPR023213 -
Stsc60681g00006 435 FunFam Tryptamine hydroxycinnamoyl transferase 219 433 - -
Stsc60681g00006 435 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 20 431 - -
Stsc60681g00006 435 Pfam Transferase family 21 430 - -
Stsc60681g00006 435 FunFam Spermidine hydroxycinnamoyl transferase 12 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60681g00006 Stsc-Chr60681 47476 50954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60681g00006 22 435 Monolignol Biosynthesis Gene Families AT5G48930 35.814 3.72e-90 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60681g00006 K15400 - gmx:100794490 697.967