Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60680g00010 ATGAAGATGATTCACAATGGATTCTCTAACCTCCGCACCTGCTTCCGTCTCCCGCTCCCGGAGACCTCGCTCTCCCGACCACTGCCGCATTCCCTCCCTTTTCGCCGGAGATGTCTTGCCACAGTGTCCGCCGCCGCTAACAAGGAGAAAGAGAAGGTGATAGTCATTTCCGGACCCACCGGTACCGGAAAGAGCCGCCTGGCTCTCGAGCTCGCCAAGCGCCTCAACGGAGAAATCGTCAGTGCCGACTCCATCCAGGTATATCAGGGTCTTGATATTGGATCTGCAAAGCCTTCCCAAAGTGATAGAAAGGAGGTACCACATCATCTGGTTGACATACTGCATCCATGTGAAGATTATTCTGTTGGACAGTTTTTCGAGGATGCAAGACAAGCTACAAGATCTATTCTTGACAAAGGACGTGTTCCCATAGTTGTCGGGGGCACTGGACTGTATTTAAGATGGTTCATATATGGAAAGCCAGATGTGCCTATAGCCTCTCAGGACATTACATCCAAAGTACATCTAGAGTTGGCTGAACTGCAGAGAAAAGAAGAATGGGATGCAGCTGTGCAGTTGGTGGTAAAAGCAGGTGATCCGAAGGCCCAACTCTTAGCAGTGAATGATTGGTATCGCTTACGGCGTAGCCTGGAAATTATTAAGTCCAGTGGGTCACCTCCTTCTGCTTTTCGGGTACCATATGATTCTTTCAGGGATCAGGATGACCTTAATGTTACTGATGGTTCTGGGGCAAACACAGCAGAAGAAACCAATACGTCAGATTTGGACTACGAGTTTATGTGTTTTTTCCTTTCTGTCCAAAGACTTGAACTCTATAAATCACTTGATTATCGGTGTGAAGAAATGCTATTAGGAAGGGATGGCATTCTATCTGAGGCTCAATGGCTTCTTAATTTGGGTCTTCTTCCAAATTCAAATTCTGCAACACGAGGAATTGGTTACAGACAAGCCATGGAGTACTTATTAAGTTGCAGACAGCTTAATGGTCAGAGTTCAGTAGGAGAATTTTACAAGTTCTTATCTGAATTTCAAAAAGTATCACGGAATTTTGCAAAGAGACAGCTGACATGGTTTCGAAATGAAAAAATATACAACTGGCTTGATGCTTCTAAACCTCTGGAAACAGTACTCGACTTCATTGTTGATTCATACCAGAACAGGAGTGGAAGTCTAGTTGTGCCCGGGAACCTAAGAATGCCAAGGGATATTACTAGTCACCGAGAAGCTAATTTAATTAAGTCTTACAGAACCAGAAACAGGCATTTTGTGAGGCGAGAAGATTGTTCTCATATTCTGGACTGGATAGGGAAGACCCAAAGTGGGATGCAAAGAGTGGTAAATCCAATAGAAGGAAATTACGAGAGAGTCTGA 1392 0.4476 MKMIHNGFSNLRTCFRLPLPETSLSRPLPHSLPFRRRCLATVSAAANKEKEKVIVISGPTGTGKSRLALELAKRLNGEIVSADSIQVYQGLDIGSAKPSQSDRKEVPHHLVDILHPCEDYSVGQFFEDARQATRSILDKGRVPIVVGGTGLYLRWFIYGKPDVPIASQDITSKVHLELAELQRKEEWDAAVQLVVKAGDPKAQLLAVNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFRDQDDLNVTDGSGANTAEETNTSDLDYEFMCFFLSVQRLELYKSLDYRCEEMLLGRDGILSEAQWLLNLGLLPNSNSATRGIGYRQAMEYLLSCRQLNGQSSVGEFYKFLSEFQKVSRNFAKRQLTWFRNEKIYNWLDASKPLETVLDFIVDSYQNRSGSLVVPGNLRMPRDITSHREANLIKSYRTRNRHFVRREDCSHILDWIGKTQSGMQRVVNPIEGNYERV 463
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc60680g00010 463 Hamap tRNA dimethylallyltransferase [miaA]. 53 385 IPR018022 GO:0008033
Stsc60680g00010 463 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 50 373 IPR039657 -
Stsc60680g00010 463 CDD NK 53 105 - -
Stsc60680g00010 463 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 183 IPR027417 -
Stsc60680g00010 463 FunFam tRNA dimethylallyltransferase 9 161 232 - -
Stsc60680g00010 463 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 53 230 IPR018022 GO:0008033
Stsc60680g00010 463 Gene3D - 162 232 - -
Stsc60680g00010 463 Pfam IPP transferase 86 368 - -
Stsc60680g00010 463 Gene3D - 50 430 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc60680g00010 Stsc-Chr60680 37737 44199 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60680g00010 56 370 C2H2 Transcription Factor Family AT2G27760 23.242 3.19e-17 82.0