Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60680g00003 ATGGGAACACCCTTCAAGCCAATACCATGCACAAGAAGAACCACATGCTATAGACTAGAAACCAAGAACTTATCTTACAAATTATGCAGCCAATTTGATGATCTTAGAAGCCTTTGTTTCGGGTCGAATCGAAGGAGGAGGAGCAGCGGAGGGAAATACATTTTGAAGGATGTTACTTGTGAGGCAAGGCCCGGGGAGCTGACAGCCATTGCTGGCCATAGTGGAGCTGGAAAAACCACCCTGCTTGAAATCCTTGCAGGGAGAATATCTCCCTGCAAAGTTTCCGGCCAATTGCTCGTGAATCATCGGCCGATTGATTTGAACCGGTTTAGAAGAATGTCTGGCTATGTAACACAGGAAGATGCCTTGTTTCCATGTCTTACAGTGAGAGAGACACTCATGTATAGTGCTTTGCTGAGGCTTCCCGGGGGCCAAAAACTGGCTGCTAAAAGAGTTGAGGACTTGATCAATGAACTCGGGCTGGATCATGTTGCGGATTCAAGAATTGGTGATGGATCAAGCCATGGAATTTCGGGTGGCGAAAGGAGGAGAGTCTCCATTGGTGCTGACTTGGTTCATGACCCTGCAGTTATCTTGATTGATGAACCAACTTCAGGGTTGGATTCTGCATCAGCTCTTAGTGTAATCTCATTGCTTAGACTAATGGCATTCAATCAAGGAAAGACAATTGTTCTGACTATCCACCAACCCGGTTTTCGCATCTTGCAGCTATTTGATGGCCTCATCTTGCTAGCAGATGGATTCGTCGTGCACAATGGTTCATTGGATCTTCTTGAGGCTAGGCTCAGGTTATCCGGCCATCAAATTCCGGCCCGCGTCAATGTCCTTGAATATGCACTTGATGTCATGGACAGCTTGGTTATACACACATCATCAGAATCTGAGGAGAACCAATATCTTCTTAGAGACAAAGAGTATGAAGATCACAGGATGAGAATGCAGTACTCCAAGATTGCTAAAGAAAAGGCTCTCTTGTACTCGAATACTCCTGTGGAAGAGATTCTGATCTTGGGAAGAAGGTTTTGCAGCAACATATTCAGAACTAAGCAACTCTTTCTCACCAGAGTTGTACAAGCCTTGGTAGCTGGATTCATTCTTGGAACTATATTCTTGAATACAGGTAGCAAGCAAGGTCAATTAGCATTGCAGACGCGAAGCGGCTTCTTTGCTTTCAGCCTTACGTTTCTGCTATCTTCGACCACAGAAGGCTTGCCAATTTTCTTGGAAGAGAGGAGAACTTTGATGAGAGAGACCTCAAGAGGAGCTTATAGAGTTTCTTCCTATGTTCTTGCAAACACCCTTGTTTTTCTTCCTTTCCTTCTAATGCGCTCTCGTGCCAAATTTCATCCTTGGCAACTCGGTGATTGCAGGCCTAATGGGGTCTTTCTTCCTGTTTTCGGGTTATTTCATATCGAAGGAGAAGATGCCTAG 1452 0.4497 MGTPFKPIPCTRRTTCYRLETKNLSYKLCSQFDDLRSLCFGSNRRRRSSGGKYILKDVTCEARPGELTAIAGHSGAGKTTLLEILAGRISPCKVSGQLLVNHRPIDLNRFRRMSGYVTQEDALFPCLTVRETLMYSALLRLPGGQKLAAKRVEDLINELGLDHVADSRIGDGSSHGISGGERRRVSIGADLVHDPAVILIDEPTSGLDSASALSVISLLRLMAFNQGKTIVLTIHQPGFRILQLFDGLILLADGFVVHNGSLDLLEARLRLSGHQIPARVNVLEYALDVMDSLVIHTSSESEENQYLLRDKEYEDHRMRMQYSKIAKEKALLYSNTPVEEILILGRRFCSNIFRTKQLFLTRVVQALVAGFILGTIFLNTGSKQGQLALQTRSGFFAFSLTFLLSSTTEGLPIFLEERRTLMRETSRGAYRVSSYVLANTLVFLPFLLMRSRAKFHPWQLGDCRPNGVFLPVFGLFHIEGEDA 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60680g00003 483 CDD ABCG_EPDR 44 260 - -
Stsc60680g00003 483 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 17 449 - -
Stsc60680g00003 483 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524|GO:0016887
Stsc60680g00003 483 SMART AAA_5 64 255 IPR003593 GO:0016887
Stsc60680g00003 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 267 IPR027417 -
Stsc60680g00003 483 Pfam ABC-2 type transporter 340 450 IPR013525 GO:0016020|GO:0140359
Stsc60680g00003 483 Pfam ABC transporter 55 205 IPR003439 GO:0005524
Stsc60680g00003 483 FunFam ABC transporter G family member 10 36 284 - -
Stsc60680g00003 483 Gene3D - 34 281 IPR027417 -
Stsc60680g00003 483 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 30 278 IPR003439 GO:0005524
Stsc60680g00003 483 Pfam ABC-2 type transporter 235 309 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60680g00003 Stsc-Chr60680 7861 9443 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60680g00003 54 265 Calmodulin-binding Proteins AT2G36910 27.854 1.85e-12 68.2