Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60679g00003 ATGAATTCAAATTCAACATCACTTATTTCTTCTCCTTTTGAGCCAAATATCAAAATTGAGGATTCAAAAGGTCACATACTCTTATTGTTCCCAAAGCAATATTCTTCTCACTACTTATCTATTTTCTTGACATGCATTATTGTTATCATTGTCACCAAATTTCTTCATGCAAAAACCACAAAGAAAAACTTCAAGAACCTTCCACCCGGACCTTCTTTTCTTACCATGATGCAAAACCTTGTTGAGTTTTACAACAAGCCCCAACAAACACTAGCCAAGCTTGCTAAGCTTCATGCCCCAGACATAATGCTTCTAAATCTTGGTTTTCAATCATCAACTACTATAATTATCTCTTCACCAAACATTGCCAAAGAAGTGCTCCAAACCAATGATTTGTTGTTCTCTGATCGAATGGTTCCGGCTATTGTAACCGCTCTTGATCACCACAACTTTAGCTTGCCCTTCTTACCGGTATGTCCACTTTGGAAAGATCTAAAAAAAATATGCAATGAACAATTGTTCTCTACCAAAGTCCTTGACGCAAGTCAAGAGCTTCGACAAAAGAAGCTTCTAGATCTTCTTACCGACGTGCAAAAATACTGCCGGACCGGTGAAGCCGTTGATGTTGGGAGAGCGGCTTTTAGGGCATGCATAAATTTCTTGTCCTATACTTTTGTATCCGAGGATTTTGTCGAATCCGTGGAGAATGAGAAGGAAGAGTACAAAGATATGGTTTCTACTCTCTTGAAACTATCTGGAACAGCAAATGTGGTTGATGTTTTTCCGGTGTTAAAGGTTCTTGATCCACAAGGGCTTCAAAGGAACTCCGCTCATTACATTACCATGTTTTTCCAGAGATTGGACGAGTTGATTGATAAACGGTTGAAGGAAAGAGAAGAGGAGAATAATTATGTCACAAACAATGACATGTTGGACACACTTCTTCATATTTCTCATCAGGATAGCCAGAGGATGGATAGAGAAAAGATCAAACATTTTTTGCTGGATCTACTTGTTGCTGGAACAGACACCACTGCATTTGGATTAGAAAGAGCAATGACTGAATTACTTCATAACCCAAAGGCCATGTCAAAAGCCAAACAAGAATTAGAACAAATCATTGGAAAAGGTAACCCTATTGAGGAATCCAATGTTTCTAAATTGCCATACTTACAGGCCATCGTAAAAGAGACACTAAGATTGTATCCGCCAGCTCCACTTTTGCTCCCAAGAAAAGCAAAAATTGATGTTGAAGTTTCAGGCTACACAATCCCAAAGGATGCAAGAGTTCTAATAAATGCATGGGCTATGGGTAGAAACCCTAATATATGGGAAGATGCACATTTGTTCTTGCCAGAGAGGTTTTTGGGGTCTAATATTGATGTTAAAGGAAGAGATTTTCATCTCACACCGTTTGGTAGTGGAAGAAGAATTTGTCCAGGTGCACCACTTGCTGTTAGAATGATGCATGTGATGTTGGGATCATTGATCAATTCTTTTGATTGGAAACTTGAAAATAACATCAAGCATGAGGATATGGACATGGATCAACCCCTCCGAGCTATTCCAGTTGAACTAAATAATTAA 1587 0.3863 MNSNSTSLISSPFEPNIKIEDSKGHILLLFPKQYSSHYLSIFLTCIIVIIVTKFLHAKTTKKNFKNLPPGPSFLTMMQNLVEFYNKPQQTLAKLAKLHAPDIMLLNLGFQSSTTIIISSPNIAKEVLQTNDLLFSDRMVPAIVTALDHHNFSLPFLPVCPLWKDLKKICNEQLFSTKVLDASQELRQKKLLDLLTDVQKYCRTGEAVDVGRAAFRACINFLSYTFVSEDFVESVENEKEEYKDMVSTLLKLSGTANVVDVFPVLKVLDPQGLQRNSAHYITMFFQRLDELIDKRLKEREEENNYVTNNDMLDTLLHISHQDSQRMDREKIKHFLLDLLVAGTDTTAFGLERAMTELLHNPKAMSKAKQELEQIIGKGNPIEESNVSKLPYLQAIVKETLRLYPPAPLLLPRKAKIDVEVSGYTIPKDARVLINAWAMGRNPNIWEDAHLFLPERFLGSNIDVKGRDFHLTPFGSGRRICPGAPLAVRMMHVMLGSLINSFDWKLENNIKHEDMDMDQPLRAIPVELNN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60679g00003 528 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 472 481 IPR017972 GO:0005506|GO:0016705
Stsc60679g00003 528 SUPERFAMILY Cytochrome P450 65 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60679g00003 528 FunFam Cytochrome P450 76C4 59 526 - -
Stsc60679g00003 528 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 42 518 - -
Stsc60679g00003 528 PRINTS P450 superfamily signature 479 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60679g00003 528 PRINTS P450 superfamily signature 340 357 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60679g00003 528 PRINTS P450 superfamily signature 393 404 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60679g00003 528 PRINTS P450 superfamily signature 470 479 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60679g00003 528 PRINTS E-class P450 group I signature 392 410 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60679g00003 528 PRINTS E-class P450 group I signature 479 502 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60679g00003 528 PRINTS E-class P450 group I signature 433 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60679g00003 528 PRINTS E-class P450 group I signature 329 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60679g00003 528 PRINTS E-class P450 group I signature 349 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60679g00003 528 PRINTS E-class P450 group I signature 122 143 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60679g00003 528 PRINTS E-class P450 group I signature 469 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60679g00003 528 Gene3D Cytochrome P450 53 521 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60679g00003 528 Pfam Cytochrome P450 68 513 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc60679g00003 528 Coils Coil 231 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60679g00003 Stsc-Chr60679 28704 31086 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60679g00003 42 525 Cytochrome P450 AT2G45550 38.878 7.36e-128 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60679g00003 - - aip:107612182 909.057