Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60677g00006 ATGATGGCAAGTTTTCAGTTTCTGAGTTTGCTGATTGTTGTTTCATCAGTTTTAACTTGCTATGGAGACAGCAATGATAACATGAATATTCAGCTGAATGATGATGTTCTTGGCCTAATTGTGTTCAAATCAGACCTCCATGACCCTTCTTCATCTCTTGCTTCATGGAATGAAGATGATTCAAGTGCTTGTTCATGGAACCGTGTTCAGTGCAATCCAGCAACTGGAAGAGTCACTGAGATCAATCTTGATGGGTTAGGATTATCTGGGAAAATTGGAAGAGGCCTTGAGAAGTTGCAGCATCTAATGGTATTGTCCCTTTCTCATAACAACTTCAATGGTAGCATTACTCCTTCACTTGCACTTTCCAGCACCATTCAGAGTCTTAATCTGAGTTACAATGGCTTCTCTGGTCAAATACCAGCTTCATTTGTCAACATGAGTTCAATTAGGTCTCTTGATGTTTCTCACAACTCATTCTCAGGACAAATCCCTCAAAATTTCTTTGACAATTGCAATTCCCTTCATTACCTTTCTTTGTCCAATAACATGTTTGATGGACAAATTCCCAGCACAATTTCTAGATGTTCTTCATTGAATAGCATTGATCTTTCGAATAACCGTTTCACCGGTTATGTCGATTTTGCTGGTGCTTGGTCATTGAGTAGGCTTAGGCAATTGGATCTTTCCAACAATGCCTTATCTGGTTCTTTGCCTAAGGGAATTTCTTCAATTCATAACTTGAAAGAGTTACTGTTAAGGAAAAACCAGTTCTCAGGTCCATTACCTAGTGATATTGGACTCTGTCTTCATTTGAATAAGCTTGATTTGAGTGATAATCAGTTCAATGGAGAGTTGCCAGAGTCATTCAAAATGCTTAAATCTCTGAGCTATTTAAGTACATCGAATAACATTTTTGCCGGCGAATTTCCTCAATGGATTGGTACCATGACTAGTCTAGAACACTTGGATCTTTCCAACAATCAGTTCACTGGAGCTATTCCGGATTCCATTGGAGAATTGAGATCACTGGCATATCTGAGTGTTTCGAATAACAAGCTCGAAGGGAACATTCCAGCTTCATTAGTTTCTTGCACAGAGTTATCAGTGATCAAGCTTAGAGGGAATGGTTTCAATGGAAGCATACCAGAGGGCTTGTTTGGCCTTGGATTGGAGAAAATAGATTTTTCTCATAATCAGTTAACAGGTTCAATCCCAGCAGGTTCAAGCAGGCTATTGGAAAGTCTCATCAATTTGGATCTCTCAGAGAATCATCTTCAGGGGAATATCCCTGCTGAAATGGGTCTACTTTCAAAGCTTAGATACTTGAATTTGTCTTGGAATGATCTTCATTCTCATATGCCTCCAGAGTTTGGTATGCTTCAGAATCTGACAGTGTTGGATCTTCGAAACAGTGCCTTGATAGGCTCGGTTCCATCCGATATATGCGATTCGGGCAATTTGGCTGTTCTTCAACTTGATGGAAATTCATTGGAGGGATCCATTCCAGAGCAGATTGGAAATTGTTCATCTCTTTACATGCTGAGTTTATGTCACAATAATTTGAGTGGTTCAATCCCAAAGTCCATGTCAAAGCTAAGCAAGCTCAAGATTCTCAGATTGGAGTTCAATGAACTAAGTGGAGAGATTCCAATGGAGCTTGGAATGCTCCAGAACCTTCTTGCTGTGAACATTTCACACAACAAACTCACAGGTAGGCTTCCAACAGGAAACATATTTCAGAACTTGGACAAGAGTTCCTTGGAAGGAAACTATGGTCTGTGTTCACCATTGCTGAAAGGTCCATGTAAGATGAATGTGCCAAAGCCACTGGTTCTTGATCCAAATGAATATAACAACCAAATGGGCTCTCCTGGGCAAAGAAATGAATCATCTATGGATACTGGCCTAAGTCATCACCACAGATTCCTTAGTGTTTCGGCCATTGTGGCGATTTCGGCCTCATTTGTAATCATATTAGGAGTTATTGCAATTAGCCTACTCAATGTTTCTGTAAGGAGAAGGTTAACATTTGTGGACAATGCCTTGGAAAGCATGTGCTCGAGTTCTTCAAGATCCGGATGTCCGGCCACAGGGAAGCTGATTCTGTTTGATTCGCAGTCCGGCTCACCTGATTGGATCAGCAATCCGGAATCCTTGCTCAACAAGGCATCAGAGATTGGTGAAGGGGTGTTTGGGACAGTTTACAAAGCTCCATTTGGATCACATGGAAGAATTGTGGCAATCAAGAAACTCATAACATCAAACATAATCCAATATCCTGAAGATTTCGACAGAGAAGTTAGGATCCTTGGGAAAGCAAGGCATCCAAATTTGATTGCACTGAAAGGTTACTATTGGACACCTCAAATTCAGCTTCTAGTAACTGAGTATGCATCAAATGGCAGCCTCCAATCTAAGCTCCATGAGAGAATCACTTCAATACCTCCACTTTCTTGGCCTAATAGGTTCAAGATCTTGCTTGGAACAGCAAAGGTTTTGATGACTTGCTATGGAGACATTCAGCTGAATGATGATGTTCTTGGCCTAATTGTGTTCAAATCAGACCTCCATGACCCTTCTTCATCTCTTGCTTCATGGAATGAAGATGATTCCAGTGCTTGTTCATGGAGCTGTGTTCAGTGCAATCCATCAACTGGAAGAGTCACTGAGATCAATCTTGATGGGTTAGGATTATCTGGGAAAATTGGAAGAGGCCTTGAGAAGTTGCAGCATCTAATGGTATTGTCTCTTTCTCATAACAACTTCAATGGTTCCATTACTCCTTCACTTACACTTCCCAGCACCATTCAGACTCTTAATCTAAGTTACAATGGCTTCTCTGGTCAAATACCACCTTCATTTCTCAACATGACTTCAATTAGGTCTCTTGATCTTTCTCACAACTCATTCTCAGGACAAATCCCTCAAAATTTCTTTGACAATTGCAATTCTCTCCACTACCTTTCTTTGTCCAATAACATGTTTGATGGACAAATTCCCACCACAATTTCTAGATGTTCTTCATTGAATAGCATTGATCTTTCGAGCAACCGTTTCGCCGGTTTTGTCGATTTTGCTGGTGTTTGGTCATTGAGTAGGCTTAGGCAATTGGATCTTTCCAATAATGCCTTATCTGGTTCTTTGCCTAATGGAATTTCTTCAATTCATAACTTGAAAGAGTTATTGTTAAGGAAAAACCAGTTCTCAGGTCCATTACCTAATGATATTGGACTCTGTCTTCATTTGAATAAGCTTGATTTGAGTGATAATCAGTTCAATGGAGAGTTACCAGAGTCATTGAAGATGCTTAAATCTCTGAGCTATTTAAGTACATCGAATAACATTTTCGCCGGCGAAATTCCTCAATGGTTTGGTACCATGACTAGTCTTGAACACTTGGATCTTTCCAACAATCAGTTCGCCGGAGCTATTCCGGATTCCATTGGAGAATTGACATCATTGGCATATCTGAGTGTTTCGAATAACAAGCTCGAAGGGAACATTCCGGCTTCATTAGTTTCTTGCACAGCATTATCAGTGGTCAAGCTTAGAGGGAATGGTTTCAATGGAAGCATACCAGAGGGCTTGTTTGGCCTTGGATTGGAGAAAATAGATTTTTCTCAAAACCAGTTAACAGGTTCAATCCCAGCAGGTTCAAGCAGGCTATTGGAAAGTCTCACCAATTTGGATCTCTCAGAGAATCATCTTCAGGGGAATATCCCTGCTGAAATGGGTCTACTTTCAAAGCTTAGATACTTGAATTTGTCTTGGAATGATCTTCATTCTCAGATGCCTCCAGAGTTTGGTATGCTTCAGAATCTGACAGTGTTGGATCTTCGAAACAGCGCCTTGATAGGCTCCGTTCCATCCAATATATGCGATTCGGGCAATTTGGCTGTTCTTCAACTTGATGGAAATTCATTGGAGGGGTCTATTCCAGAGCAGATTGGAAATTGTTCATCTCTTTACATGCTGAGTTTATGTCACAATAGTTTGAGTGGCTCAATCCCAAAGTCCTTGTCAAAGCTAAGCAAGCTCAAGATTCTCAGATTGGAGTTCAATGAACTAAGTGGAGAGATTCCAATGGAGCTTGGAATGCTACAAAATCTTCTTGCTGTGAACATATCACACAACAAACTCACAGGTAGGCTTCCAACAGGAAGCATATTTCAGAACTTGGACAAGAGTTCCTTGGAAGGAAACTATGGTCTGTGTTCACCATTGCTGAAAGGTCCTTGTAAGATGAATGTGCCAAAGCCACTAGTTCTTGATCCAAATGAATATAACAACCAAATGGGCTCTCCTGGGCAAAGAAATGAATCATCTATGGATACTGGCCTAAGTCATCACCACAGGTTCCTTAGTGTTTCGGCCATTGTGGCGATTTCGGCCTCATTTGTAATCATACTAGGGGTTATTGCTATTAGCCTACTCAATGTTTCTGTAAGGAGAAGGTTAACATTTGTGGACAATGCCTTGGAAAGCATGTGTTCAAGTTCTTCAAGATCCGGATGTCCGGCCACAGGGAAGCTGATTCTGTTCGATTCGCAGTCCGGATCGCCGGATTGGATCAGCAATCCGGAATCCTTGCTCAACAAGGCATCAGAGATTGGTGAAGGGGTGTTTGGGACAGTTTACAAAGCTCCATTTGGATCACATGGAAGAGTTGTGGCAATCAAGAAACTCATAACATCAAACATAATCCAATATCCTGAAGATTTCGACAGAGAAGTTAGGATCCTTGGAAAAGCAAGGCATCCAAATTTGATTGCATTGAAAGGTTACTACTGGACACCACAAATTCAGCTTCTAGTAACTGAGTATGCAGCAAATGGTAGCCTCCAATCCAAGCTTCATGAGAGAATCCCTTCAATTCCTCCACTTTCTTGGCCTAATAGGTTCAAGATCTTGCTTGGAACAGCAAAGGGTCTTGCACATTTGCACCATTCATTCCGGCCGCCAATAATTCACTACAACATAAAGCCAAGCAACATCCTTCTCGACGAAAACTTCAATCCGAAGATATCGGATTTCGGGTTGGCAAGGCTTCTAACAAAGCTTGACAAGCATGTTATGAGCAACAGGGTTCTTCTTGAGCAAGGGAATGTGTTGGAGTGTGTTGATCCATGCATGAATGAGTATCCAGAAGATGAAGTCTTGCCAGTTTTGAAGCTTGCAATGGTTTGCACTTCTCAGATTCCTTCTAGCAGGCCTTCTATGGCAGAAGTTGTGCAAATTCTTCAAGTCATTAAGACTCCAGTTCCTCAAAGGATGGAAGTGTTCTGA 5289 0.4114 MMASFQFLSLLIVVSSVLTCYGDSNDNMNIQLNDDVLGLIVFKSDLHDPSSSLASWNEDDSSACSWNRVQCNPATGRVTEINLDGLGLSGKIGRGLEKLQHLMVLSLSHNNFNGSITPSLALSSTIQSLNLSYNGFSGQIPASFVNMSSIRSLDVSHNSFSGQIPQNFFDNCNSLHYLSLSNNMFDGQIPSTISRCSSLNSIDLSNNRFTGYVDFAGAWSLSRLRQLDLSNNALSGSLPKGISSIHNLKELLLRKNQFSGPLPSDIGLCLHLNKLDLSDNQFNGELPESFKMLKSLSYLSTSNNIFAGEFPQWIGTMTSLEHLDLSNNQFTGAIPDSIGELRSLAYLSVSNNKLEGNIPASLVSCTELSVIKLRGNGFNGSIPEGLFGLGLEKIDFSHNQLTGSIPAGSSRLLESLINLDLSENHLQGNIPAEMGLLSKLRYLNLSWNDLHSHMPPEFGMLQNLTVLDLRNSALIGSVPSDICDSGNLAVLQLDGNSLEGSIPEQIGNCSSLYMLSLCHNNLSGSIPKSMSKLSKLKILRLEFNELSGEIPMELGMLQNLLAVNISHNKLTGRLPTGNIFQNLDKSSLEGNYGLCSPLLKGPCKMNVPKPLVLDPNEYNNQMGSPGQRNESSMDTGLSHHHRFLSVSAIVAISASFVIILGVIAISLLNVSVRRRLTFVDNALESMCSSSSRSGCPATGKLILFDSQSGSPDWISNPESLLNKASEIGEGVFGTVYKAPFGSHGRIVAIKKLITSNIIQYPEDFDREVRILGKARHPNLIALKGYYWTPQIQLLVTEYASNGSLQSKLHERITSIPPLSWPNRFKILLGTAKVLMTCYGDIQLNDDVLGLIVFKSDLHDPSSSLASWNEDDSSACSWSCVQCNPSTGRVTEINLDGLGLSGKIGRGLEKLQHLMVLSLSHNNFNGSITPSLTLPSTIQTLNLSYNGFSGQIPPSFLNMTSIRSLDLSHNSFSGQIPQNFFDNCNSLHYLSLSNNMFDGQIPTTISRCSSLNSIDLSSNRFAGFVDFAGVWSLSRLRQLDLSNNALSGSLPNGISSIHNLKELLLRKNQFSGPLPNDIGLCLHLNKLDLSDNQFNGELPESLKMLKSLSYLSTSNNIFAGEIPQWFGTMTSLEHLDLSNNQFAGAIPDSIGELTSLAYLSVSNNKLEGNIPASLVSCTALSVVKLRGNGFNGSIPEGLFGLGLEKIDFSQNQLTGSIPAGSSRLLESLTNLDLSENHLQGNIPAEMGLLSKLRYLNLSWNDLHSQMPPEFGMLQNLTVLDLRNSALIGSVPSNICDSGNLAVLQLDGNSLEGSIPEQIGNCSSLYMLSLCHNSLSGSIPKSLSKLSKLKILRLEFNELSGEIPMELGMLQNLLAVNISHNKLTGRLPTGSIFQNLDKSSLEGNYGLCSPLLKGPCKMNVPKPLVLDPNEYNNQMGSPGQRNESSMDTGLSHHHRFLSVSAIVAISASFVIILGVIAISLLNVSVRRRLTFVDNALESMCSSSSRSGCPATGKLILFDSQSGSPDWISNPESLLNKASEIGEGVFGTVYKAPFGSHGRVVAIKKLITSNIIQYPEDFDREVRILGKARHPNLIALKGYYWTPQIQLLVTEYAANGSLQSKLHERIPSIPPLSWPNRFKILLGTAKGLAHLHHSFRPPIIHYNIKPSNILLDENFNPKISDFGLARLLTKLDKHVMSNRVLLEQGNVLECVDPCMNEYPEDEVLPVLKLAMVCTSQIPSSRPSMAEVVQILQVIKTPVPQRMEVF 1762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60677g00006 1762 Gene3D Ribonuclease Inhibitor 36 145 IPR032675 -
Stsc60677g00006 1762 ProSiteProfiles Leucine-rich repeat profile. 1226 1248 IPR001611 GO:0005515
Stsc60677g00006 1762 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 715 798 - -
Stsc60677g00006 1762 Gene3D Transferase(Phosphotransferase) domain 1 707 840 - -
Stsc60677g00006 1762 ProSitePatterns Protein kinases ATP-binding region signature. 1538 1562 IPR017441 GO:0005524
Stsc60677g00006 1762 FunFam Leucine-rich repeat receptor-like protein kinase 843 1001 - -
Stsc60677g00006 1762 SUPERFAMILY Protein kinase-like (PK-like) 713 837 IPR011009 -
Stsc60677g00006 1762 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 1526 1609 - -
Stsc60677g00006 1762 Gene3D Ribonuclease Inhibitor 316 606 IPR032675 -
Stsc60677g00006 1762 Gene3D Ribonuclease Inhibitor 1127 1417 IPR032675 -
Stsc60677g00006 1762 Gene3D Ribonuclease Inhibitor 146 215 IPR032675 -
Stsc60677g00006 1762 SUPERFAMILY Protein kinase-like (PK-like) 1535 1756 IPR011009 -
Stsc60677g00006 1762 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 1002 1098 - -
Stsc60677g00006 1762 PANTHER OS05G0588300 PROTEIN 973 1101 - -
Stsc60677g00006 1762 Pfam Leucine rich repeat 319 377 IPR001611 GO:0005515
Stsc60677g00006 1762 Pfam Leucine rich repeat 487 546 IPR001611 GO:0005515
Stsc60677g00006 1762 Pfam Leucine rich repeat 960 1020 IPR001611 GO:0005515
Stsc60677g00006 1762 Pfam Leucine rich repeat 1298 1357 IPR001611 GO:0005515
Stsc60677g00006 1762 Pfam Leucine rich repeat 1122 1165 IPR001611 GO:0005515
Stsc60677g00006 1762 Pfam Leucine rich repeat N-terminal domain 844 883 IPR013210 -
Stsc60677g00006 1762 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Stsc60677g00006 1762 SMART LRR_typ_2 910 934 IPR003591 -
Stsc60677g00006 1762 SMART LRR_typ_2 99 124 IPR003591 -
Stsc60677g00006 1762 SMART LRR_typ_2 1248 1271 IPR003591 -
Stsc60677g00006 1762 SMART LRR_typ_2 1344 1370 IPR003591 -
Stsc60677g00006 1762 SMART LRR_typ_2 958 982 IPR003591 -
Stsc60677g00006 1762 SMART LRR_typ_2 461 485 IPR003591 -
Stsc60677g00006 1762 SMART LRR_typ_2 1128 1152 IPR003591 -
Stsc60677g00006 1762 SMART LRR_typ_2 557 582 IPR003591 -
Stsc60677g00006 1762 SMART LRR_typ_2 1032 1056 IPR003591 -
Stsc60677g00006 1762 SMART LRR_typ_2 1272 1296 IPR003591 -
Stsc60677g00006 1762 SMART LRR_typ_2 1224 1247 IPR003591 -
Stsc60677g00006 1762 SMART LRR_typ_2 221 245 IPR003591 -
Stsc60677g00006 1762 SMART LRR_typ_2 147 171 IPR003591 -
Stsc60677g00006 1762 SMART LRR_typ_2 317 341 IPR003591 -
Stsc60677g00006 1762 SMART LRR_typ_2 437 460 IPR003591 -
Stsc60677g00006 1762 ProSitePatterns Protein kinases ATP-binding region signature. 727 751 IPR017441 GO:0005524
Stsc60677g00006 1762 SUPERFAMILY L domain-like 861 1197 - -
Stsc60677g00006 1762 SMART LRR_sd22_2 317 349 - -
Stsc60677g00006 1762 SMART LRR_sd22_2 1128 1160 - -
Stsc60677g00006 1762 SMART LRR_sd22_2 1199 1229 - -
Stsc60677g00006 1762 SMART LRR_sd22_2 221 250 - -
Stsc60677g00006 1762 SMART LRR_sd22_2 388 421 - -
Stsc60677g00006 1762 SMART LRR_sd22_2 1032 1061 - -
Stsc60677g00006 1762 ProSiteProfiles Protein kinase domain profile. 1532 1762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60677g00006 1762 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 32 192 - -
Stsc60677g00006 1762 Pfam Protein kinase domain 1534 1689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60677g00006 1762 Pfam Protein kinase domain 723 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60677g00006 1762 FunFam Inactive leucine-rich repeat receptor-like protein kinase 313 606 - -
Stsc60677g00006 1762 Gene3D Transferase(Phosphotransferase) domain 1 1614 1694 - -
Stsc60677g00006 1762 SUPERFAMILY L domain-like 1127 1399 - -
Stsc60677g00006 1762 SUPERFAMILY L domain-like 50 386 - -
Stsc60677g00006 1762 SUPERFAMILY L domain-like 311 588 - -
Stsc60677g00006 1762 FunFam Inactive leucine-rich repeat receptor-like protein kinase 1125 1417 - -
Stsc60677g00006 1762 Gene3D Ribonuclease Inhibitor 844 999 IPR032675 -
Stsc60677g00006 1762 Gene3D Ribonuclease Inhibitor 216 312 IPR032675 -
Stsc60677g00006 1762 Gene3D Transferase(Phosphotransferase) domain 1 1695 1759 - -
Stsc60677g00006 1762 PRINTS Leucine-rich repeat signature 1035 1048 - -
Stsc60677g00006 1762 PRINTS Leucine-rich repeat signature 1224 1237 - -
Stsc60677g00006 1762 Gene3D Ribonuclease Inhibitor 1000 1119 IPR032675 -
Stsc60677g00006 1762 Gene3D Phosphorylase Kinase; domain 1 1532 1613 - -
Stsc60677g00006 1762 ProSiteProfiles Protein kinase domain profile. 721 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60677g00006 1762 FunFam Os07g0541700 protein 1611 1699 - -
Stsc60677g00006 1762 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 193 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60677g00006 Stsc-Chr60677 37883 46892 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60677g00006 2 834 Receptor kinase-like Gene Family AT3G28040 61.786 0.0 986
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Stsc60677g00006 Pkinase 2.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60677g00006 - - gmx:100795810 1415.21