Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60676g00004 ATGAAAGAAGATGAAGGAAGGGAAGAGAAGAAGCAGCGGCGCTACTGCGCATTAGTTTTCGGTTCCAATGGTGGGAGCTTGATGGGTAGTCCGCAAAGACGTGTAGGAAAGGACATTCTTAAAGGTGCCGTCAATGATTTGAGGGAGTTGGATATAGAAAAAGAGAAAGAAGATGAGACATCTCCAAGGGGTGTCTTAGAAGCTTGTGCTAAAGAATTTAATAACTCTCATCAATCTCAGCTGCAACCATTTGAATCAAAGACAGCAAGTCGATCAATTTCAAGCAGGGCACGCTCTCGGTGGGGCAAATTTTTCAAATTGTGGAAAATAAAATCAACAAAGAATCACCTTCCTTCCTTACACACTCTTAGTATTCCAAAGTTTCGATGGAAGAGCAAAACCTTTAAAGAAGATGCTTCTGCGCATTCTACTCTTAGTAATGGTTTATACACCTTCAGGTCTTCTTTGATCACTTTTAGCCTCTCACAATTACAATATGCAACCAACAATTTTAGCAGCGAAAATTTAATAGGAAAAGGTGGTTTTGCTGAGGTTTACCAGGGTTGTCTTGAAGAAGGGAAACTAATAGCAGTGAAGAAAATGACGAATGGAAGCATTGAAGAAAAGACAGCATGTTTTCTATCAGAGCTTGGTGTTATTGCTCATGTTGATCATCCTAATACTGCCAAGATTATTGGATGTTGTGTTGAAGGTGAAATGCATCTTGTCTTTGCACTTTCTCCTCTTGGAAGTTTAGGATCACTTCTTCATGGGCCAAATAAAGAGAAACTAGATTGGATTAAAAGGTACAATATTGCTTTGGGAATAGCTGATGGGTTACTGTATCTACATGAGAGTTGTCACAGACGGATTATTCATAGAGATATTAAAGGAGACAATATTTTGCTCACTGAGAAATTTGAGCCACAGATTTGCGATTTCGGGCTCGCAAAATGGTTACCTGAACAATGGACTCACTGCAACGTAACAAATATTGGAGGAACATTTGGGTACTGA 1017 0.3943 MKEDEGREEKKQRRYCALVFGSNGGSLMGSPQRRVGKDILKGAVNDLRELDIEKEKEDETSPRGVLEACAKEFNNSHQSQLQPFESKTASRSISSRARSRWGKFFKLWKIKSTKNHLPSLHTLSIPKFRWKSKTFKEDASAHSTLSNGLYTFRSSLITFSLSQLQYATNNFSSENLIGKGGFAEVYQGCLEEGKLIAVKKMTNGSIEEKTACFLSELGVIAHVDHPNTAKIIGCCVEGEMHLVFALSPLGSLGSLLHGPNKEKLDWIKRYNIALGIADGLLYLHESCHRRIIHRDIKGDNILLTEKFEPQICDFGLAKWLPEQWTHCNVTNIGGTFGY 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60676g00004 338 PANTHER OS08G0249100 PROTEIN 50 338 IPR046958 -
Stsc60676g00004 338 SMART serkin_6 171 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60676g00004 338 Gene3D Transferase(Phosphotransferase) domain 1 248 338 - -
Stsc60676g00004 338 Gene3D Phosphorylase Kinase; domain 1 131 245 - -
Stsc60676g00004 338 FunFam Os07g0541700 protein 248 335 - -
Stsc60676g00004 338 Coils Coil 40 60 - -
Stsc60676g00004 338 ProSiteProfiles Protein kinase domain profile. 171 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60676g00004 338 ProSitePatterns Protein kinases ATP-binding region signature. 177 200 IPR017441 GO:0005524
Stsc60676g00004 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
Stsc60676g00004 338 SUPERFAMILY Protein kinase-like (PK-like) 151 338 IPR011009 -
Stsc60676g00004 338 Pfam Protein tyrosine and serine/threonine kinase 174 320 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60676g00004 Stsc-Chr60676 29840 33445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60676g00004 156 338 Receptor kinase-like Gene Family AT1G53420 47.849 1.92e-47 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc60676g00004 PK_Tyr_Ser-Thr 3.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60676g00004 - - aip:107615479 470.7