Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60676g00003 ATGGGAGTTTTGTGGGGAAGGAATGAGAGGAGAAACGACTTCGTTTTGGCTATTGCATATGAGTTTCACAATTTGGGGAGAAACAACATTGTTTGGGACATAGGAAGCGAGAATGAGTCCATGCTAGGCACGGTTGAGTCAAAACAAGACCCGTTTCAGTCACACAAGCACTTTCCGTTGCCATCTGGTGAGTATTTTGCTCCTGAATATTGCATGCATGGCATAGTAGATGAAAAAACTGATATATTTTCTTTTGGAGTCTTACTTCTGGAGATCGTAAGTGGGCGTCCAGCTTTGGATGATATGCAGAAAAGCCTTGTGCTATGGGCCAAACCTTTGCTTGAAGCTAAGAATATTGAAGCACTTGTTGATCCTTCTCTTGGTGATGATTATGATAAGGACCAAATAGGTCATGTTGTTTTGACTGCATCAAAGTGTATTGATCAATCTCCTCTTTTAAGACCTTGCATGAGTGAGGTAGTGGCACTACTAAGAGGTGATGATAAGTGTGAGTTAGAATCTACAAGTACAGGGCAAAGTAAGGCTCTTCAAAGAACATACTCAGAAGAACTACTAGATGCACAAGAATACAACTCAACAAAATATCTTAGAGATCTCAGTCGACATAGGCAACTTGCATTGGGTACTTGTGAATCTTGA 660 0.4076 MGVLWGRNERRNDFVLAIAYEFHNLGRNNIVWDIGSENESMLGTVESKQDPFQSHKHFPLPSGEYFAPEYCMHGIVDEKTDIFSFGVLLLEIVSGRPALDDMQKSLVLWAKPLLEAKNIEALVDPSLGDDYDKDQIGHVVLTASKCIDQSPLLRPCMSEVVALLRGDDKCELESTSTGQSKALQRTYSEELLDAQEYNSTKYLRDLSRHRQLALGTCES 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60676g00003 219 SUPERFAMILY Protein kinase-like (PK-like) 62 176 IPR011009 -
Stsc60676g00003 219 Gene3D Transferase(Phosphotransferase) domain 1 24 189 - -
Stsc60676g00003 219 Pfam Protein tyrosine and serine/threonine kinase 58 110 IPR001245 GO:0004672|GO:0006468
Stsc60676g00003 219 ProSiteProfiles Protein kinase domain profile. 1 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60676g00003 219 PANTHER OS08G0249100 PROTEIN 65 209 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60676g00003 Stsc-Chr60676 26217 29223 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60676g00003 65 173 Receptor kinase-like Gene Family AT1G53420 39.823 6.80e-21 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc60676g00003 PK_Tyr_Ser-Thr 3.5e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60676g00003 - - aip:107615479 288.5