Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60674g00008 ATGGGGTCCGAACGAGTGTTGAAATGGGATTGGTGGGTGAAACAACGTGATCAGAGGAGTTGGACAAAGGAGAGATTTAGAGAGTTGGAAAAGGCTTCTTTCTCTATTTTTGTGGATAATTTACCGGAATTTATATCTAAGAAGAAATTGTTTCACTTGTTTAGTTGGTATGGTATGATTAATGACATCTACCTATCCAGGAAGATGAAAGGGGGAAAGCTGCATTTGTTTGCGTTCATAAGATATACAACAAAGAGAGGTGTGTTGAAGGCTATTGCAGAGATAAATTATATGAATCTTAATGGGAGAAAATTATTCGTAGGTAAGGCTAGGAATAGGAGAGACAACAAAATCCTTGAGGTTAATACAAGCCCAAGAAATGTAGCGGAGATAGATATAGAGTTTGTGAATGGAAGGGAGTTTGATTCGGCTGCAGAATTAGTGCTTTTGGAGTGTGTTGAGTCTGAAAAGGAGGTTGTGAAAAGAGATATAGTACAAGACGTTTTGGATGAGTGGAGTTTTCCCTTTTTCAATCGAAGTGGAGCGTTTAATGTTCCAATGTTGAAGGTTCATTCAGCAGAATTGGTGGTGATGAATCACAATGGAGATGAAGAATTTGATGGCTCAACTTTACTTCCATACAAGATTTTGAATGAATGGAATTTCGAAAATGAAAATAAATCTGATAGGAGTGAAAATGAGAGCTCGGAACAAACAATAACTTGGAGTTATGGGAAAAAGGAGTGTGGTGAAAACAATCTTAGTTTGTTGAAAGATGTTGGTGTTGGGTCAGAGGATGCTATGGAGCTGAGTGATCCTTTGGCGACAAACGAATCTGTGTGCTCATCTGAAGTAGGAATTGGTGAGGTTGTCAAGGAGGTGTCTCATGATAAGCAGATTCTCTCAAAAAGAAAGGAGAAAGAAGCAAACCCGATGGAGAGGGGTTCCAAATTAGTTGGGGGAGAGCGGCGATTTGTTCAAACTGCTGAGAATGGCCTAGGGGTTTCCGATGATGAAGATTTTATGTCCGGATTAAAGGAGCTTAATGAAGCTAGAGAGTTGAAAAGAAGAGAAGCAAAGAAGAAGAAGAAGGCGCGTAAGAGTAGGTCGAAAAAGTTAAAGCTATGA 1128 0.3945 MGSERVLKWDWWVKQRDQRSWTKERFRELEKASFSIFVDNLPEFISKKKLFHLFSWYGMINDIYLSRKMKGGKLHLFAFIRYTTKRGVLKAIAEINYMNLNGRKLFVGKARNRRDNKILEVNTSPRNVAEIDIEFVNGREFDSAAELVLLECVESEKEVVKRDIVQDVLDEWSFPFFNRSGAFNVPMLKVHSAELVVMNHNGDEEFDGSTLLPYKILNEWNFENENKSDRSENESSEQTITWSYGKKECGENNLSLLKDVGVGSEDAMELSDPLATNESVCSSEVGIGEVVKEVSHDKQILSKRKEKEANPMERGSKLVGGERRFVQTAENGLGVSDDEDFMSGLKELNEARELKRREAKKKKKARKSRSKKLKL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60674g00008 375 SMART rrm1_1 35 108 IPR000504 GO:0003723
Stsc60674g00008 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 105 IPR000504 GO:0003723
Stsc60674g00008 375 MobiDBLite consensus disorder prediction 352 375 - -
Stsc60674g00008 375 CDD RRM_SF 36 107 - -
Stsc60674g00008 375 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 27 116 - -
Stsc60674g00008 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Stsc60674g00008 375 Gene3D - 12 123 IPR012677 -
Stsc60674g00008 375 SUPERFAMILY RNA-binding domain, RBD 18 115 IPR035979 GO:0003676
Stsc60674g00008 375 Coils Coil 345 368 - -
Stsc60674g00008 375 MobiDBLite consensus disorder prediction 357 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60674g00008 Stsc-Chr60674 46060 47187 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60674g00008 30 107 Eukaryotic Initiation Factors Gene Family AT1G49760 25.641 2.22e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60674g00008 - - ahf:112805528 131.724