Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60673g00011 ATGGGGCGAGGGAGAGTGCAATTGAAGAGGATTGAGAACAAGATCAACCGCCAAGTCACTTTCTCAAAGAGAAGAGCTGGTTTGCTTAAGAAGGCTAATGAGATCTCCGTTCTCTGCGATGCCGAAGTCGCTCTCATCGTCTTCTCTTGCAAAGGGAAGCTCTTTCAGTTCTCCAGTGACCCCTGTATGGAGAAGATACTTGAAAGGTATGAGCGGTATTCATATGCAGAGAGACAGCTTGCTGCAAATGATCAAGGACCAAATGAAAATTGGACTCTAGAATATGCAAGGCTCAAAGCAAGGGTGGAAGTCTTACAGAGAAATCAAAGGAATTTTATGGGAGAAGATCTGCAATCCTTAAGTCTAAAAGAGCTTCAGAATTTAGAACAGCAGCTTGATTCTGCCCTAAAACAAGTTAGATCACGAAGGAACCAACTCATTTATGAGGATATCTCAGTTCTTCAGAAAAAGGAGAAGACCCTACAAGAACAAAACACCATGCTAGCTAAGAAGATCAAGGAGAAAGAAAAAGCAATCACACAACAACCTCAAATGGAGATGCAAAATAACTTTATGGATCTAACCCCCTTTGTTGTGGCACCTCATCATCATCAATCCTCTGAGAACTTGAACATGGGAGGATTCCCACAAGGTAGAAATGATGGCGAACATAATGAAGATATGGCAGCTAATGCTCGTGCTAATACCCTTCTTCCTCCATGGATGATTCGTCCTATAAATGAATAG 747 0.4203 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKANEISVLCDAEVALIVFSCKGKLFQFSSDPCMEKILERYERYSYAERQLAANDQGPNENWTLEYARLKARVEVLQRNQRNFMGEDLQSLSLKELQNLEQQLDSALKQVRSRRNQLIYEDISVLQKKEKTLQEQNTMLAKKIKEKEKAITQQPQMEMQNNFMDLTPFVVAPHHHQSSENLNMGGFPQGRNDGEHNEDMAANARANTLLPPWMIRPINE 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60673g00011 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
Stsc60673g00011 248 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc60673g00011 248 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Stsc60673g00011 248 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc60673g00011 248 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Stsc60673g00011 248 Coils Coil 88 108 - -
Stsc60673g00011 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc60673g00011 248 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Stsc60673g00011 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc60673g00011 248 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Stsc60673g00011 248 Coils Coil 154 178 - -
Stsc60673g00011 248 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc60673g00011 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc60673g00011 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc60673g00011 248 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc60673g00011 248 Coils Coil 118 145 - -
Stsc60673g00011 248 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60673g00011 Stsc-Chr60673 52810 58662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60673g00011 1 241 MADS-box Gene Family AT1G26310 58.755 2.63e-95 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc60673g00011 K-box 3.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60673g00011 K09264 - gmx:100816836 331.643