Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60673g00006 ATGCAGGACTCGCCTTCCGCCGCCGCCGCCGCCGCCGCTTCCGGTGGCAGGTTTTTCGCCGGAGGAATCGGAGACAGGAGGTTGAGGCCTCACAACCAGATCCATCACCAGGAACCGTTGAAGTGCCCTCGCTGTGATTCCGTTAACACGAAGTTCTGCTACTACAACAACTATAACCTCTCTCAGCCGCGCCATTTCTGCAAGAATTGTCGCCGGTACTGGACAAACGGCGGCGTTCTCCGTAACGTCCCCGTCGGCGGCGGTTGTCGCAAATCCAAATCCAAGCGCTCCAAGAAAATTAGCTACAACTGCTCTTCTTCTTTGGAAATTTCACCGGAAACTACAACGCCACCGCAACCGGAGTTTCCGGAGGGGAATTTGAATAATTCGAACTCGAACTGTAGCAGTGAAAGCTCTAGCCTCACCGCCACCACGGAAGCGGTGTCTCCGGCGACGTCGAACGCTGCGTTGAGCAACAACAAGGTGATTCTCGACGAGAACGGGAATAACCCTAACTTCAACGGTGGCGGTGGCTGTTACAACGGTTTCTCTGACGTAGGAACGTTCACGAGCCTTATGAGTTCAGCTAACGAAACGTTGTCGTTTGGTTTTGAAAATAATGTTAACGTTCTCGATACGACGTCGTTTCGTTTCGGCAGTGATGGTGGTGGTGGTGAGTGGCAACAGCAGCAGCAGAAAGTTATGGGAATTGGGAGCGATGCATCGGCGCCGTTGATGCTGGATCAGATGGCTCCCGTTGAGTTGTCGTCGCTGCAGAATGGGAAAGTTAGCAACGGTGAATGTGGACCGTTGGATTGGCATGGTTCAGATCATGGTCATGATCATGGTTTCTTTGATCTTACTAGCACCACCGTTGATCAGGCTTACTGGTCCCACACTTATTGGTCTGATCAAGACCCTAATCTTAATCTCTTTCCATGA 942 0.5202 MQDSPSAAAAAAASGGRFFAGGIGDRRLRPHNQIHHQEPLKCPRCDSVNTKFCYYNNYNLSQPRHFCKNCRRYWTNGGVLRNVPVGGGCRKSKSKRSKKISYNCSSSLEISPETTTPPQPEFPEGNLNNSNSNCSSESSSLTATTEAVSPATSNAALSNNKVILDENGNNPNFNGGGGCYNGFSDVGTFTSLMSSANETLSFGFENNVNVLDTTSFRFGSDGGGGEWQQQQQKVMGIGSDASAPLMLDQMAPVELSSLQNGKVSNGECGPLDWHGSDHGHDHGFFDLTSTTVDQAYWSHTYWSDQDPNLNLFP 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60673g00006 313 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Stsc60673g00006 313 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 33 205 IPR045174 GO:0003700|GO:0006355
Stsc60673g00006 313 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Stsc60673g00006 313 MobiDBLite consensus disorder prediction 108 147 - -
Stsc60673g00006 313 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60673g00006 Stsc-Chr60673 23785 25430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60673g00006 25 306 C2C2-Dof Transcription Factor Family AT5G60850 42.475 5.59e-48 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc60673g00006 zf-Dof 5.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60673g00006 - - gmx:778116 235.728