Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60672g00006 ATGACAGAATCAAACGCACTAGCAAATGGCTTAGCTGGTGCTGGTGGCGGTATTATTGCTCAAATCATAACTTATCCTCTTCAAACGGTTAACACGCGTCAGCAAACTGAAAGAACACTCAAGAGGAACAACCACAACAATTTGCTTCTTCAATCCTCCAATTCAATCACTTCTTCTCCTCCTGCTGCTGGCACTCTTCTTCAGATCCTTCATGTAATTGGAAGTGAGGGTTGGGGTGGACTCTACAGTGGTCTCAAGCCTTCTCTACTCGGAACTGCTGCTTCACAGGGAATATACTATTACTTCTATCAGGTTTTCAAGAACAAGGCAGTGGCTATTGCAGCTGCTAGAAAGCTTAAAGGCCATGGAGATGGTACTGTTGGAATGTTTGGTTGGCTTGTTGTTGCTGCTATTGCTGGGTCCTTGAATGTTCTGCTAACAAACCCAATCTGGGTTCTAGTGACTCGTATGCAGACACATACTCAAGCAGAAAGAAAAATCATGGAGGAAAAGAAAGAGGCCTTGAGAAGGGCAGCTTCTGAAAGCAGCTTAGCAGGCTCAATTTTAAGAGAGAAATTGGCTGAACTTGATTCTAAGAAACCTCTGCCATATGGAACTTTACATGCAGCTAATGAAGTGTATAGTGAAGCTGGTATTATTGGATTTTGGAAGGGTGTCATTCCTGCACTTATTATGGTCTGCAATCCATCAATACAGTTTATGATTTATGAGAGCTCGCTAAAGCGTCTGAAGGCGCGGTCGGCTAAGAAGCAGGGTAGTGTAACTGCATTGGAGGTCTTTCTTTTGGGAGCAATAGCAAAACTTGGAGCAACTGTGTCAACATACCCCTTACTTGTTGTCAAGTCAAGGCTTCAAGCAAAACAGGAGATTGGTGCTAGTAACTCATTAAGATACTCAGGTACGTTTGATGCAATACTGAAAATGATCCGTTATGAAGGGTTGCCTGGTTTCTACAAAGGGATGAGCACAAAGATTGTACAGAGTGTTTTTGCAGCATCTGTTCTATTCATGATTAAGGAGGAGCTTGTTAAGGCTTTCATTTCATTGACAGATAAGAGCAAAAAAGTTGTATCAAATTTGAGGAATTGA 1110 0.4216 MTESNALANGLAGAGGGIIAQIITYPLQTVNTRQQTERTLKRNNHNNLLLQSSNSITSSPPAAGTLLQILHVIGSEGWGGLYSGLKPSLLGTAASQGIYYYFYQVFKNKAVAIAAARKLKGHGDGTVGMFGWLVVAAIAGSLNVLLTNPIWVLVTRMQTHTQAERKIMEEKKEALRRAASESSLAGSILREKLAELDSKKPLPYGTLHAANEVYSEAGIIGFWKGVIPALIMVCNPSIQFMIYESSLKRLKARSAKKQGSVTALEVFLLGAIAKLGATVSTYPLLVVKSRLQAKQEIGASNSLRYSGTFDAILKMIRYEGLPGFYKGMSTKIVQSVFAASVLFMIKEELVKAFISLTDKSKKVVSNLRN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60672g00006 369 Gene3D Mitochondrial carrier domain 47 366 IPR023395 -
Stsc60672g00006 369 SUPERFAMILY Mitochondrial carrier 5 348 IPR023395 -
Stsc60672g00006 369 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 109 IPR018108 -
Stsc60672g00006 369 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 5 359 IPR044712 GO:0006862|GO:0055085
Stsc60672g00006 369 ProSiteProfiles Solute carrier (Solcar) repeat profile. 261 352 IPR018108 -
Stsc60672g00006 369 Pfam Mitochondrial carrier protein 261 353 IPR018108 -
Stsc60672g00006 369 Pfam Mitochondrial carrier protein 5 108 IPR018108 -
Stsc60672g00006 369 Pfam Mitochondrial carrier protein 127 250 IPR018108 -
Stsc60672g00006 369 ProSiteProfiles Solute carrier (Solcar) repeat profile. 127 249 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60672g00006 Stsc-Chr60672 27212 29881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60672g00006 192 367 Chloroplast and Mitochondria Gene Families AT2G47490 26.404 9.02e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60672g00006 K13354 - gmx:100775304 562.762