Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60672g00003 ATGGCTGCTGCTCTTGTGGGAGGAGCATTACTCTCTGCTTCTGTTCAGGTGTTATTGGATAGGATCATTTCCAATGAGTTCTTGGACTTGTTTCGGAGAAGGAAGCTTGATGTTTCAGTTCTTGGAAAGATGAAGATGACATTGCTGAGTCTTCAAGCTGTTCTAAATGATGCTGAGGAGAAGCAGATCACAAATCCTGCTGTCAAGGAATGGCTGAATGAGCTCACACAAGCTGTCTTCGACGCCGACGATTTCTTGGATGAAATCAACACCAAGGCTCTTGGTTGCAAAGTGAAAGCCAGGTATCAAAGCCGGGTATCTTGCGCTGTCAAGGTGCGAAAAGTCTTTTCCTCCCCTTTCAGAAGGTCATATGCTATGATCAATTCTAAAATGCAGACATTGTTTGAAAGATTAGAGCAATTTGCACAACAAATACAATTCCTTCAACTGAAAGAAGGTGTTTCCAATGGTGTTTGGCAAGGGGTGCCTACAAGTTCTGTGGTAGATGAATCTTCCATTTATGGAAGACATGATGAGAGGAAGAAACTTAGAGAGTATTTGCTGTCAGAAGATGTTACTGGTAGTGGAAGTAAAATAGGAGTGATCACCATTGTTGGCATGGGAGGGATTGGGAAAACAACCCTTGCTAAACTCCTATACAATGATGAACAAGTTAAAGACAAGTTTGATCTAAAAGCATGGGCTTGTGTTTCAAAGGATTTTGATGTTTTCAGGGTCACCAAGACTGTTCTTGAATCGGTTACTTCGAAAACAACAAATAGTGATAACTTGAATACTCTCCAAGTGGAATTGCAGCAAAGGTTGTGGCGGAAAAGATTTTTGCTTGTGTTGGATGACATCCGTGGCGCAAGCTATGTTGATTGGGCAAATCTAAAGGACATTTTCAATGCTGGAGAGATGGGAAGTACAATCATTGTCACAACACGAGATGAAAACGTTGCAAAAGCTATGCAAACCTTTCCTATCTTCCATCTGAGTTCTCTTGATAGTGAAGATTGCTGGTGTTTACTTGCTGAACACGCATTTGGAGCAAATAATTGCAATGAAAGGTCCAACTTAGAAGGAATCGGAAGAGAGATTGTGAAGAAATGTGATGGTTTGCCTTTAGCTGCAGTTGCATTGGGGGGTCTTCTTCGCACCAAATTATCAAAAAGTGACTGGAACAAGGTCTTAAGAAGTAACATCTGGGATCTGCCAAATTTGAATGTGCAACCTGCTTTGCTACTGAGCTATCATTTCCTTCCGGCTCCTTTGAAACGTTGCTTTGCTTATTGTTCAATCTTCCCAAAGAACTCAGTCTTAGAAAAAGAGATGGTAGTTCGGCTATGGATGGCGGAAGGCTTAGTACATGTTTCGAAAAATGAGAAAAGCCTGGAGGAAGCAGGTAATGAATACTTTGATGAACTAGTATCAAGGTCACTGATTCGTCGACAGTCCATGGATGGGAAAAACTTTGAAATGCATGACCTCATCAATGATTTAGCCGCGATGGTTTCGTCTGCTTATTGTATGAGGTATGAGGATCAAAGGCCAGTTGAAAATCCGGACAAAGTTCGTCATTTGTCATACAATAGAAGTTGGTACGACTACTTCAATAAATTCGATTGCTTTTATGGTTTAAAAGGCCTACGCACCTTCCTTCCCTTACCATTAAATGGATGGTCATTTGATTATTACCTATCAAACAAGGTAATATATGACTTGTTGCCCAAGTTAACACAGTTAAGGGTATTGTCTTTGTCACACTACAAGAATATCTCTGAGTTACCAGAATCCATTGGAGGTTTAAAGCATTTGAGGCATTTGGATCTATCTGGAACTAACATTAAAAGGTTGCCTTCTGTGATTTGCAAGCTGTACAATCTACAAACCTTGTTGCTGTCTGATTGCAAGTTTCTCACTGAATTGCCTGAGGAGATAGGAATGTTGGTGAATCTACGCCACCTTGACATTAGTGGAACTCAATTGCAGGAGATTCCGGCGCAAATAGCTAGACTAGAAAATCTCCAAACCTTGTCTGGCTTTGTTGTCAGCAGAGAGCAAAATGGATTGAAGGTTGCAGAATTGCAAAAGTTTCCCAATTTACAAGGGAAGCTTTGCATTTCAAAGCTACAAAACATTATTGATCCTTATGATGCTTCACGAGCCGATATGAAAAACAAAGAACAAATTGAAGATCTATCATTAGAATGGGATAACTGCACTGCTGAAGACTCCCAACATCTTGTGCTGGAGCACCTGCAGCCTTCAACAAACTTGAATAAACTAACCATCAAATCCTATGGTGGAACTCGCTTTCCGAATTGGTTGGGTAGTTCCTCATTTGACAACATGGTTTATTTGTGCATCCGTAGTTGTCACCATTGTTCATCACTACCACCTGTTGGACAGCTTCATAATCTTAAAGAACTCACCATATTTGATGTTATCTCAGTGAAGACTATTGGTCCTGAGTTTTATGGATGTAGCAGCTCTCATTCTTTTCAACCATTTCCCTCCTTGGAGACACTGAGTTTTGGAGAGATGCCGGAATGGGAGGAATGGAACTTCATGGTTGGTATAGCTACTCACTTTCCTTGTCTTTCTCATCTGTCTCTAAGCGATTGTCCGAAACTCAAAGGAAATTTACCCAGCAACCTTCCTTCCTTGACTAAACTTCATTTATCAAGTTGTTCTTTACTTGAGTCACAAGTTTCTGCTGAAGTGGATAACAGAAACATTATGAATGCATCAATGCTTGGTCTTCATTCTCTTCAACAATTACATATCGAAGGCATTCCTTCTCGGACTGCCTTCCCTAGAGATGGTCTGCCAAAAACGTTGAGAGTTCTCTTTCTCAAAAATTGCGAGAACTTCGAATTCCCAAATCATGAATCCCTGCATAGTTACACTGCACTTGAGTCTTTGACAATATGGAAAAGTTGTTGCTCGCTCACATCTTTTTCCTTAGGCTGTCTCCCTGTCCTCAAGTGGCTATACTTTATAGAATGTGAAAATCTGAAAACACTTTCAATATCAGAAGAGGAAGATGCACTCCAGTGTCTCACATTTCTTCAAGGCTTCTACATTATAGATTGTCCTGAACTGGAATCATTTCCTCGTCTCGGATTGCCAACTCCTAAGCTCAGACGTTTTTGGGTGTCATATTGCAACAAGCTTAGTTCACTACCAGAACCAGTTAATGCTCTTGTAGGCCTTCAAGAATTGACCATTCTCAACCTACCAAATGTTCAATCTTTTGCAAATGAGGGACTTCCAATCAGTTTAAGAACACTAAGAATTGGCAATCTTGGAGAGGCTTTCTCAAATGCAGATATCATTAACTGGGGCCTAGATCGCCTTACTTGCCTTTCGGAGTTGGAAATCGAAGGCGGCTATCTGGTTAGCATGCTAATGAAAATGGAAGTGGCACTATTACCTTCTACTCTAACCTCCCTACACATCTATCAGCTTGATGGTATAAGGCATTTGGATGGGAAATGGCTTCAGAATCTGAGTTGCCTTGAATGTCTTAAGATTTCATCTTGTGATAGGCTGGAGTCATTGCCAGAGGAAGGATTGCCTTCATCTCTTTCGGTATTGACTATAGGGAGTTGCCTCTTGTTAGAAGCGAGCTGCCGGAGGAATGGGGGGAAAGAGTGGCCTAAAGTTGCTCACATTCCTTGCATCATTATGGATAACAAGAATAATAATATGAGGGTATGGAAGAGGGCGGCCGGAGTTCTGAAGGACAAGTACAGAATCTGGCTGGCGAAATTCTCTCCGCACGGCCACCCGGATCTTGAAAGAGTGGTGATAAAGGCTACAAGCCATAACGAGCAATGCATGGATTACAAGAGCATACAGAGGGTGTTCCAATGGCTACGAAGCTCGCCATTGTACCTGAAGCCTCTTCTCTATACTCTCTCAACGAGGATGGAAAACACAACTAGCTGGGTTGTTGCAATCAAGGGACTAATGCTCATCCATGGCGTCTTCTGCTTCGATCTTCCAACTGTTCAAATGTTAAGGAGGCTTCCATTTGATATATCACACTTTAGCGACGGTCATTTAAACCCTGAGAAAGCGTGGGGATACAACGCCTTCATTCGCGCCTATTACAGTTACTTGGATCTCAAGTCATCGTATGTTTGCGCACAGGCGAGACGGCGGAACAGGAAGGGAAAGAAGATGGAGGAGACTTTGATTGAGGAGCTTCAGAATTTGGAGAAGATTCAAGGTTTGATCGACGCGATCCTTCATTTGAAGCCGCAGAATCCTTCCATGCATGTTGTGCTTGTTCTTGAGGCCATGGATTGTGTGATTGATGAGATTCTTGAAGTTTATGAGAGCTATTGCAAGGGAATGGAGAGAGTGATTATGAAGATATTTGATATGGGAGGGAAGGTTGAAGCTGGAATGGCGGTTAGGATAATCGAGAGAGGCGAAATGCAAGGAGAGAAACTGGGTTTGTATTTCGAATTCTGTAAGGAGATCGGCGTCCTCAACAGTTATGATTGTCCCAGGATCTTGAAGGTGTCTGAGAAAGATGTTAAAGAACTGAAGGGAATAATAATTGATGGAGTGAATGAGAAGAAGAAGAATAAGAACATGGATGATGAAGATGAAAATATGGCAATTGTGGTTAGAGATTGCATTAACAACAATGATGATTTGTTGATGAAGAAAACAGTGATTACTGATCAGTGGGAGGTTTTTGATGATGATGATAACATGGCATTGAGCAAGGCTATTGTTGCTGTTGCTGCTGCTGCTAATCCATTTTTGGAACTTGAATCTTGTAATAGCATTGTGCCTTATAATCATCATCATGTTCTTCCAGATCTCATAACTTTCTAA 4860 0.4146 MAAALVGGALLSASVQVLLDRIISNEFLDLFRRRKLDVSVLGKMKMTLLSLQAVLNDAEEKQITNPAVKEWLNELTQAVFDADDFLDEINTKALGCKVKARYQSRVSCAVKVRKVFSSPFRRSYAMINSKMQTLFERLEQFAQQIQFLQLKEGVSNGVWQGVPTSSVVDESSIYGRHDERKKLREYLLSEDVTGSGSKIGVITIVGMGGIGKTTLAKLLYNDEQVKDKFDLKAWACVSKDFDVFRVTKTVLESVTSKTTNSDNLNTLQVELQQRLWRKRFLLVLDDIRGASYVDWANLKDIFNAGEMGSTIIVTTRDENVAKAMQTFPIFHLSSLDSEDCWCLLAEHAFGANNCNERSNLEGIGREIVKKCDGLPLAAVALGGLLRTKLSKSDWNKVLRSNIWDLPNLNVQPALLLSYHFLPAPLKRCFAYCSIFPKNSVLEKEMVVRLWMAEGLVHVSKNEKSLEEAGNEYFDELVSRSLIRRQSMDGKNFEMHDLINDLAAMVSSAYCMRYEDQRPVENPDKVRHLSYNRSWYDYFNKFDCFYGLKGLRTFLPLPLNGWSFDYYLSNKVIYDLLPKLTQLRVLSLSHYKNISELPESIGGLKHLRHLDLSGTNIKRLPSVICKLYNLQTLLLSDCKFLTELPEEIGMLVNLRHLDISGTQLQEIPAQIARLENLQTLSGFVVSREQNGLKVAELQKFPNLQGKLCISKLQNIIDPYDASRADMKNKEQIEDLSLEWDNCTAEDSQHLVLEHLQPSTNLNKLTIKSYGGTRFPNWLGSSSFDNMVYLCIRSCHHCSSLPPVGQLHNLKELTIFDVISVKTIGPEFYGCSSSHSFQPFPSLETLSFGEMPEWEEWNFMVGIATHFPCLSHLSLSDCPKLKGNLPSNLPSLTKLHLSSCSLLESQVSAEVDNRNIMNASMLGLHSLQQLHIEGIPSRTAFPRDGLPKTLRVLFLKNCENFEFPNHESLHSYTALESLTIWKSCCSLTSFSLGCLPVLKWLYFIECENLKTLSISEEEDALQCLTFLQGFYIIDCPELESFPRLGLPTPKLRRFWVSYCNKLSSLPEPVNALVGLQELTILNLPNVQSFANEGLPISLRTLRIGNLGEAFSNADIINWGLDRLTCLSELEIEGGYLVSMLMKMEVALLPSTLTSLHIYQLDGIRHLDGKWLQNLSCLECLKISSCDRLESLPEEGLPSSLSVLTIGSCLLLEASCRRNGGKEWPKVAHIPCIIMDNKNNNMRVWKRAAGVLKDKYRIWLAKFSPHGHPDLERVVIKATSHNEQCMDYKSIQRVFQWLRSSPLYLKPLLYTLSTRMENTTSWVVAIKGLMLIHGVFCFDLPTVQMLRRLPFDISHFSDGHLNPEKAWGYNAFIRAYYSYLDLKSSYVCAQARRRNRKGKKMEETLIEELQNLEKIQGLIDAILHLKPQNPSMHVVLVLEAMDCVIDEILEVYESYCKGMERVIMKIFDMGGKVEAGMAVRIIERGEMQGEKLGLYFEFCKEIGVLNSYDCPRILKVSEKDVKELKGIIIDGVNEKKKNKNMDDEDENMAIVVRDCINNNDDLLMKKTVITDQWEVFDDDDNMALSKAIVAVAAAANPFLELESCNSIVPYNHHHVLPDLITF 1619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60672g00003 1619 SUPERFAMILY GAT-like domain 1404 1524 - -
Stsc60672g00003 1619 Gene3D Ribonuclease Inhibitor 564 714 IPR032675 -
Stsc60672g00003 1619 SUPERFAMILY ENTH/VHS domain 1267 1383 IPR008942 -
Stsc60672g00003 1619 Pfam ANTH domain 1267 1522 IPR011417 GO:0005543
Stsc60672g00003 1619 Gene3D Ribonuclease Inhibitor 1045 1215 IPR032675 -
Stsc60672g00003 1619 Gene3D Ribonuclease Inhibitor 722 883 IPR032675 -
Stsc60672g00003 1619 Gene3D Ribonuclease Inhibitor 884 1044 IPR032675 -
Stsc60672g00003 1619 ProSiteProfiles ENTH domain profile. 1260 1391 IPR013809 -
Stsc60672g00003 1619 Gene3D - 334 416 IPR042197 -
Stsc60672g00003 1619 PRINTS Disease resistance protein signature 201 216 - -
Stsc60672g00003 1619 PRINTS Disease resistance protein signature 371 385 - -
Stsc60672g00003 1619 PRINTS Disease resistance protein signature 885 901 - -
Stsc60672g00003 1619 PRINTS Disease resistance protein signature 274 288 - -
Stsc60672g00003 1619 FunFam Probable disease resistance protein At1g61300 162 327 - -
Stsc60672g00003 1619 Gene3D - 158 327 IPR027417 -
Stsc60672g00003 1619 Pfam NB-ARC domain 198 398 IPR002182 GO:0043531
Stsc60672g00003 1619 SMART LRR_typ_2 650 673 IPR003591 -
Stsc60672g00003 1619 SMART LRR_typ_2 603 626 IPR003591 -
Stsc60672g00003 1619 SMART LRR_typ_2 887 910 IPR003591 -
Stsc60672g00003 1619 FunFam Putative clathrin assembly protein 1245 1388 - -
Stsc60672g00003 1619 Pfam Rx N-terminal domain 11 103 IPR041118 -
Stsc60672g00003 1619 SUPERFAMILY L domain-like 494 932 - -
Stsc60672g00003 1619 Gene3D - 19 128 - -
Stsc60672g00003 1619 PANTHER DISEASE RESISTANCE PROTEIN RP 41 876 IPR044974 GO:0006952
Stsc60672g00003 1619 SMART enth_2 1266 1391 IPR013809 -
Stsc60672g00003 1619 Gene3D ANTH domain 1389 1544 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Stsc60672g00003 1619 Gene3D - 417 504 IPR036388 -
Stsc60672g00003 1619 Coils Coil 131 151 - -
Stsc60672g00003 1619 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 432 IPR027417 -
Stsc60672g00003 1619 CDD ANTH_N_AP180_plant 1268 1378 - -
Stsc60672g00003 1619 ProSiteProfiles Leucine-rich repeat profile. 605 626 IPR001611 GO:0005515
Stsc60672g00003 1619 FunFam Probable disease resistance protein At1g63360 418 504 - -
Stsc60672g00003 1619 SUPERFAMILY L domain-like 919 1224 - -
Stsc60672g00003 1619 Gene3D - 1241 1386 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60672g00003 Stsc-Chr60672 14322 19930 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60672g00003 199 839 WRKY Transcription Factor Family AT5G45050 23.043 1.62e-11 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60672g00003 - - ahf:114924557 1420.22