Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60669g00009 ATGGATATTTTGAAGCGCATGAATAACCAACAAGAATTTCCATCATCAACTTATGGCTACCCATCATCAACACTGATTCAAACGTTATATGATCCACAGAGCTCATCATCATCATCACCGTCACTTTTCACCAACCGTTCCATGTCCTATTCATCATCTTCTACAGTGAATTATGATCATGCCTCCAATGAAGTGTCACTGTCACCAATCACATGGCCTAAACTCTCTTCATCATCATCATCTTCTTCTTCTTTATCACTACTATCATCATCAACGGCAAAGCACCCTAATAACAATAATAATAATAATATTGGACTTCACTTTTCCAACAACACCCCTTTCTGGAACGCTTCGGCTGACTCACTCCACGACATTAGAGCAGGTGCTTTTCCTTCATCACAATCCCAATATAAAACTCCTCCTTTTGAAGAACAAGACAACAAACCCATGAATTGCCCCACTATTCTACTCAACAAGCTTAAGAGTGAAGAATTGTGTAGTGTGGACTCTGTAAAGAAGAGTAATAATGTTTGCTCATCAACACTACCTGCATTCAAAAGGCCAAGAATTGAGACTCCACCTCCTTTACCAACTTTTAAGGTTCGGAAAGAGAAGTTAGGGGACCGGGTTACTGCTCTTCAGCAACTCGTTTCACCTTTCGGAAAGACCGACACTGCATCCGTTCTCCACGAAGCCATTGAGTACATCAAGTTTCTTCACGATCAAGTCACTGTTTTGAGCACTCCATATATGAAAAGCGGAGCTTCCATTCAACGCAATCAGGAATGTGATGATAGGAAAGAGTCGTCATCATCAGAAGTGGCGGGAAAACAAGATTTGAGAAGCCGAGGGCTGTGTTTGGTACCAATTTCAAGCACATTTCCGGTGGCTGCTACTGAGCCCAGTGCTGATTTCTGGACGCCCACATTCTCATTCGGAGGAGCACTCTTGAGATAA 957 0.4232 MDILKRMNNQQEFPSSTYGYPSSTLIQTLYDPQSSSSSSPSLFTNRSMSYSSSSTVNYDHASNEVSLSPITWPKLSSSSSSSSSLSLLSSSTAKHPNNNNNNNIGLHFSNNTPFWNASADSLHDIRAGAFPSSQSQYKTPPFEEQDNKPMNCPTILLNKLKSEELCSVDSVKKSNNVCSSTLPAFKRPRIETPPPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVTVLSTPYMKSGASIQRNQECDDRKESSSSEVAGKQDLRSRGLCLVPISSTFPVAATEPSADFWTPTFSFGGALLR 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60669g00009 318 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 40 295 - -
Stsc60669g00009 318 CDD bHLH_AtbHLH_like 196 247 IPR045239 -
Stsc60669g00009 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 190 239 IPR011598 GO:0046983
Stsc60669g00009 318 FunFam Transcription factor bHLH123 family 200 262 - -
Stsc60669g00009 318 Gene3D - 200 265 IPR036638 GO:0046983
Stsc60669g00009 318 MobiDBLite consensus disorder prediction 259 274 - -
Stsc60669g00009 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 253 IPR036638 GO:0046983
Stsc60669g00009 318 MobiDBLite consensus disorder prediction 257 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60669g00009 Stsc-Chr60669 52347 54601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60669g00009 184 318 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 68.889 1.36e-52 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60669g00009 - - ahf:112791361 447.203