Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60669g00004 ATGGAGCATTTGGTGTCCACAGGTGACACTCTTGCGGTTAAAGTTATTGGGACGGATTCAAGTCAAGGAGAAAAAGAATTCTTGACTGAGAAAGAGGACAGCGAAAAACACGAGCCATTGAGCTGGGATGTAAGACTTAGAATAGCACTGGATGTGGCAAGGGCACTGGAATATCTACACTATGGGGCTACTCCACCTGTTGTATACCGTGACATCAAATCTTCCAACATACTGCTGGATCAGTTCATGAGAGCTAAGGTCACTGACTGTGGCCTTTCCAGACCAGAGAAGATCGGACCTCATACTTCAATTGTCCGAGGAACTTTTGGATATCTAGATCCAGAGTATATGTCTGCAAGAACCTTCACTAAGAAAAGTGACGTTTATAGTTTTGGTGTGCTACTCTTTGAGCTTATTACTGGCAGGAATCCACAGAAAGGTCTCATGGAATATGTACAGCTAGCAGCCATGGAAGCTGAGGATATGGTTGGATGGGAAGAAATTGTGGATTCAAAACTGAATGCAAAATATGATGTGCATAAGCTTAACAATATGGCTTCGCTTGCATTCAAATGTGTCAACAAAGTCTCCAAGAGCCGGCCTACAACGAGGGAAATAGTTCAAGCATTATCTCTTCTTTGCAAGAAAAATAGAAGAAACCACAGCAGAACATCTTTTGCTACATTAAAGGAGGTTTCTATTGAAAAGGACAACACAGAAATCCAGGACTTTTCGTCAGTTAAGTGA 747 0.4203 MEHLVSTGDTLAVKVIGTDSSQGEKEFLTEKEDSEKHEPLSWDVRLRIALDVARALEYLHYGATPPVVYRDIKSSNILLDQFMRAKVTDCGLSRPEKIGPHTSIVRGTFGYLDPEYMSARTFTKKSDVYSFGVLLFELITGRNPQKGLMEYVQLAAMEAEDMVGWEEIVDSKLNAKYDVHKLNNMASLAFKCVNKVSKSRPTTREIVQALSLLCKKNRRNHSRTSFATLKEVSIEKDNTEIQDFSSVK 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60669g00004 248 Pfam Protein kinase domain 39 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60669g00004 248 PANTHER OS01G0750732 PROTEIN 35 225 - -
Stsc60669g00004 248 FunFam calcium/calmodulin-regulated receptor-like kinase 1 24 230 - -
Stsc60669g00004 248 Gene3D Transferase(Phosphotransferase) domain 1 25 238 - -
Stsc60669g00004 248 SMART serkin_6 3 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60669g00004 248 ProSiteProfiles Protein kinase domain profile. 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60669g00004 248 ProSitePatterns Serine/Threonine protein kinases active-site signature. 67 79 IPR008271 GO:0004672|GO:0006468
Stsc60669g00004 248 SUPERFAMILY Protein kinase-like (PK-like) 6 221 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60669g00004 Stsc-Chr60669 14375 15746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60669g00004 42 214 Receptor kinase-like Gene Family AT1G17910 44.565 6.15e-43 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Stsc60669g00004 Pkinase 5.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60669g00004 - - gmx:100816549 339.347