Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60667g00002 ATGGCAATAGGGAACTTCAAAGAGGATAGAGCCATAGGAAAAGGTGGATTTGGGACGGTGTACAAAGGGGTGTTTCCTGATGGCAAAGTAGTGGCAGTGAAGAAGCTCCAAATGGAAGGAACTGAGGGTGAGAAAGAGTTCAGAGCCAAAGTGAAGATTCTGAGTGGCCATGGTTTTGGTTGGCCTCATCCAAACCTTGTTACACTCTATAGCCGGTGCCTATATGGTTCACTGAAAATTCTTGTTTATGAGTACATAGGAGGAGGAAGCTTAGAGAATCTTGTCACCGACAAAGTGAGATTAATCCTTTTTGTTTATGAGTACATGAAGGAGGTTCTAGTAGAGACTCATGTTACGGCCACCTTTTTTAGTCCTTTTTGTGATTGGGGAATGTTTATGTACTCATATTAG 411 0.4234 MAIGNFKEDRAIGKGGFGTVYKGVFPDGKVVAVKKLQMEGTEGEKEFRAKVKILSGHGFGWPHPNLVTLYSRCLYGSLKILVYEYIGGGSLENLVTDKVRLILFVYEYMKEVLVETHVTATFFSPFCDWGMFMYSY 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60667g00002 136 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 98 - -
Stsc60667g00002 136 Pfam Protein kinase domain 6 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60667g00002 136 ProSiteProfiles Protein kinase domain profile. 6 136 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60667g00002 136 SUPERFAMILY Protein kinase-like (PK-like) 2 103 IPR011009 -
Stsc60667g00002 136 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Stsc60667g00002 136 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60667g00002 Stsc-Chr60667 20908 21318 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60667g00002 2 108 Receptor kinase-like Gene Family AT4G21410 39.450 1.17e-20 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Stsc60667g00002 Pkinase 4.8e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60667g00002 - - pvu:PHAVU_009G184500g 166.777