Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60666g00010 ATGGAGAAGAGCGTTAGCAGAACTCAAAAGAAGCCAATGAGCCTCAACGACTCTCATTATCGCTTCCTTCAACACCTCTCCGCTCCTTCTAAACCCTCTCCATCCAATCACAGGAGGACGGAGGAGGAGGAGGAGGATCACGATGATGCTCAAACTACCATCCAATCAGATGATCATACTATTCCACAATTCTCCGCTATCACTGACTTCGATTCTCCAATCGGGCATCACTCTGAGGACAAACACAAACCCCCTTCCATCGACGTCAAACCTCCAAAGGAAATTCCACAGGATTTGGGGCCAACGCTTCCCGATATTTCTCATACCCGCAATGACGAGAAGAAGAGCAAGTTGAAGTTGCAGGGTCGACGCCGCCTCTGCAAGGTTGCGATTTCAGACGATCGTGATAATGCAGCTGTTGATGAATCCAATTTGGATGAGCTCATCGAGCTCGAGTCGCCCCTTCCGGCACCGAAAAACGTGATCCAGATTGACGATAGTGTCGGTAAGAATGACATTAGGGATATTTTGAACGAGTTGAACTCAAAGTTCGAGTTGCTGTCAGTTGACAGGAAGCAAGAGACGAAGCAGGTGAAACCGATTGAGGGTCCTTCGGCTTTGTTTAGAGGAAAGGAAACTTATGAGGATGATGAGGTAGTAGAGTTTGGGAGTGCGGGTTCTTCATTCTCTCCACAGCAGGATCCGAGCAACAACCGGCCACAGGGTGCCGCGTATTCTGGTGGTGATACAGGAATTGAGTATGTGGAAGATGATGAATCTCCTGCAAAGGATGCTGGCGGTGATCTTGGAAATGAGTATGTGCAAGATGATGACTCAGATGATTCTGTTGAAGAATTGAAGAATTTTGAGCCGAAGGGTGATGGTTCCATCACTCTGCCTGGCCCCAAATATACTTACAAGTTGCCCAGTAAAATTGCGAAAATGTTGTATCCACATCAGAGGGATGGATTGAAGTGGCTCTGGTCTTTGCATTGTTTGGGTAAAGGTGGAATCTTGGGAGATGACATGGGTTTGGGGAAAACAATGCAGATTTGTGGCTATCTTGCTGGACTCTTTCATTCTCGAATTATTAAAAGGGCACTGGTTGTGGCCCCAAAAACCTTGTTGCCCCATTGGATCAAGGAATTATCAGCTGTTGGTCTTTCTGAGAAGACGAGAGAATATTTTGGAACTAATACAAAAGCCAGAGAATATGAACTTCAGTACATACTTCAGGATAAAGGTGTTCTTCTAACAACATACGATATTGTCCGCAACAATTCCAAGTCCCTACGAGGGGCTTATCATTTTGATGATGATGACAATGAAGATGGTGCCACATGGGATTACGTGATCCTTGATGAGGGGCACCTTATAAAGAATCCAAGCACACAGAGAGCTAAAAGTTTGCTTGATATATCATGTAGCCACCGCATTATCATTAGTGGCACACCATTGCAAAATAATCTTAAGGAGTTGTGGGCTTTGTTCAATTTCTGCTGTCCTGAGTTACTTGTACCCATACTTCGTGGAAATGACAAAAATGCTACGGACAGAGATAAGCGTGTAGGTTCTGCTATAGCAAAGGAGCTAAGAGATCGTATTCAACCTTACTTTTTGCGACGTTTGAAGAGTGAGGTTTTCAATCAAGATGATGACAAAACAACTGCAAAACTTTCTAAGAAAGAAGAGATAATTGTTTGGCTTCGATTGACTGGTATTCAGCGACATCTTTATGAAGCATTTTTGAAAAGTGAGATTGTTCTCTCAGCATTTGATGGCTCGCCACTTGCTGCCCTTACGATTTTGAAGAAAATATGCGATCATCCACTTCTGTTGACAAAGCGGGCAGCTGAGGATGTATTGGAAGGGATGGACTCAATGCTAAAGCCAGAAGAAGTCAATGTTGCTGAAAAATTGGCAAAGCACATAGCAGATGTTACAGACACAGATAGGTTTGAAGATGAGCATGGTCATGATGTATCATGCAAAATTTCTTTCATTATGTCATTATTGGATAGTCTGATTCCAGAAGGGCATAGTGTGCTTATCTTTTCTCAGACTCGCAAAATGCTTAACATTATTCAGGAATGTCTATCATCCAAAGGTTACGACTTTCTACGGATTGATGGAACAACAAAAGCCTGTGACAGATTAAGGATTGTTAATGAATTCCAAGCAGGTGCAAGTGCCCCTATATTTCTCTTGACATCTCAAGTAGGTGGTTTAGGACTCACACTCACAAGAGCAGATCGTGTGATTGTTGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGTGTTGACCGTGCATATCGTATTGGCCAAAAAAAAGATGTTCTTGTTTATAGACTGATGACATGTGGAACTGTTGAAGAAAAGATCTACAGGAAGCAGGTATATAAGGGAGGATTATTCAGAACTGCTACTGAACAAAAAGAACAAACTCGCTACTTTAGTCAGCAGGATCTTAGGGAGCTTTTCAGCCTTCCAAAGGAAGGGTTTGATGTATCTGTTACCCAACGACAATTGAATGAGGAGCATGATCGTCAACATACAGTGGATGACACTTTGAAAGCACATATAGAATTCCTGAAAAATCAAGGTATAGCAGGAGTTAGCCACCATAGTTTACTCTTTTCCAAAACAGGACCAGTTCAAGCTCCTCCTGAAGATGATGATGTGACCAGGACGAATCAAGGGACTAGATATATTGGTACTTCAGCATCATCTTCTTCAAATGACCGAATGGCTGATGGAGCTGAGTTTGCCTTTAAACCCAAGGATTTCGATAGAAGCAATAAGGGCTTTTCCCCTAGAAGTGCTGATGAATTGACAAAATCAGAAATCAAAGATAGAATTAAGCGGCTATCTCAAACTCTGTCAAATGCTGCGATGATTTCTAGATTACCGGATAAGGGGGAGAAACTACAGAAAAGGTTGAGGGAGCTGAATTTGGAGCTAACCAAATTAGAGATGGAAGAAAGAACTGGTGCTGATCTGGATGATTTCACCAGTGAGTTTCAAAGTGTGTTGAATGTATAG 3048 0.4272 MEKSVSRTQKKPMSLNDSHYRFLQHLSAPSKPSPSNHRRTEEEEEDHDDAQTTIQSDDHTIPQFSAITDFDSPIGHHSEDKHKPPSIDVKPPKEIPQDLGPTLPDISHTRNDEKKSKLKLQGRRRLCKVAISDDRDNAAVDESNLDELIELESPLPAPKNVIQIDDSVGKNDIRDILNELNSKFELLSVDRKQETKQVKPIEGPSALFRGKETYEDDEVVEFGSAGSSFSPQQDPSNNRPQGAAYSGGDTGIEYVEDDESPAKDAGGDLGNEYVQDDDSDDSVEELKNFEPKGDGSITLPGPKYTYKLPSKIAKMLYPHQRDGLKWLWSLHCLGKGGILGDDMGLGKTMQICGYLAGLFHSRIIKRALVVAPKTLLPHWIKELSAVGLSEKTREYFGTNTKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGAYHFDDDDNEDGATWDYVILDEGHLIKNPSTQRAKSLLDISCSHRIIISGTPLQNNLKELWALFNFCCPELLVPILRGNDKNATDRDKRVGSAIAKELRDRIQPYFLRRLKSEVFNQDDDKTTAKLSKKEEIIVWLRLTGIQRHLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAKHIADVTDTDRFEDEHGHDVSCKISFIMSLLDSLIPEGHSVLIFSQTRKMLNIIQECLSSKGYDFLRIDGTTKACDRLRIVNEFQAGASAPIFLLTSQVGGLGLTLTRADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTCGTVEEKIYRKQVYKGGLFRTATEQKEQTRYFSQQDLRELFSLPKEGFDVSVTQRQLNEEHDRQHTVDDTLKAHIEFLKNQGIAGVSHHSLLFSKTGPVQAPPEDDDVTRTNQGTRYIGTSASSSSNDRMADGAEFAFKPKDFDRSNKGFSPRSADELTKSEIKDRIKRLSQTLSNAAMISRLPDKGEKLQKRLRELNLELTKLEMEERTGADLDDFTSEFQSVLNV 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60666g00010 1015 MobiDBLite consensus disorder prediction 192 212 - -
Stsc60666g00010 1015 MobiDBLite consensus disorder prediction 73 89 - -
Stsc60666g00010 1015 MobiDBLite consensus disorder prediction 224 281 - -
Stsc60666g00010 1015 Gene3D - 301 563 IPR038718 -
Stsc60666g00010 1015 FunFam Protein CHROMATIN REMODELING 24 295 562 - -
Stsc60666g00010 1015 Pfam SNF2-related domain 331 612 IPR000330 GO:0005524|GO:0140658
Stsc60666g00010 1015 MobiDBLite consensus disorder prediction 922 946 - -
Stsc60666g00010 1015 MobiDBLite consensus disorder prediction 225 244 - -
Stsc60666g00010 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 303 542 IPR027417 -
Stsc60666g00010 1015 MobiDBLite consensus disorder prediction 894 918 - -
Stsc60666g00010 1015 Coils Coil 975 995 - -
Stsc60666g00010 1015 Gene3D - 564 864 IPR027417 -
Stsc60666g00010 1015 SMART helicmild6 693 776 IPR001650 -
Stsc60666g00010 1015 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 671 826 IPR001650 -
Stsc60666g00010 1015 SMART ultradead3 311 511 IPR014001 -
Stsc60666g00010 1015 CDD SF2_C_SNF 659 787 - -
Stsc60666g00010 1015 PANTHER SNF2/RAD54 FAMILY MEMBER 111 995 - -
Stsc60666g00010 1015 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 328 503 IPR014001 -
Stsc60666g00010 1015 MobiDBLite consensus disorder prediction 885 946 - -
Stsc60666g00010 1015 MobiDBLite consensus disorder prediction 1 119 - -
Stsc60666g00010 1015 Pfam Helicase conserved C-terminal domain 664 776 IPR001650 -
Stsc60666g00010 1015 MobiDBLite consensus disorder prediction 8 34 - -
Stsc60666g00010 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 558 841 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60666g00010 Stsc-Chr60666 45565 51691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60666g00010 316 830 RAD5 or RAD16-like Gene Family AT1G02670 24.334 1.12e-34 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc60666g00010 SNF2_N 4.6e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60666g00010 K20093 - gmx:100779283 1383.62