Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60666g00009 ATGACGGGACCCGGCCACAATGCCACCGCCGCCCGTGGCCGGAATCTCCTCGTTGGTGTGAAGTTGGATCCCTGGTGCCGGGAGCTTCTCACGTGGACGCTCATCAAGGTCGCCGAGCCCGGCGACGTCGTCATTGCGCTTCACGCCGTCCTCTCAGAGAATGCTGCATCTATGCTCTCTCTTGTGAAGGCTTTTGATTCAGTTCTTGATGTGTACCAAGGCTTCTGCCGCTTGAAGCAGGTTGAGCTGAAGCTTAAAGTGTGTAGAGGCACATCTGCACGTAAACTGCTTGTGCAGGAAGCTGAATCTCTTGGTGCTGATACGCTCATTTTAGGAACTTCTCAGAGCTTTCGCTCGCTCCCGTCTTCGACAGCCGTTGCCAAATACTGTGCAAAGAAACTGCCTAAGTGTGTATCTATATTTGCTGTTGATAGTGGCAAAGTCACATTCCTCAGAGAAGCTGCTGTTATGCCTAGTGATCAAGTAAAACTGTTCAGAAGCAAATCTTTAGTGAATAATCCAAAGAGAAGCCAGAAGAGCAATGAATGCTGTGTAAGGCTGTTAGTATTGCCAGATAGTTCTACAACCACACATAAGGAGGGGTTGACTGATAGTTCTAGACAGGAAAATTCACTGGCATTGGTGCCAATTCAAAATCCTGATGATGCTTCTAGTTATTTGATTCCGGTGGTCAAATCAGACTATTCGGAACCAGATAGTTCTGCAACTCTACTCAAGGGAAGGTTGAATGATAGTCATGGACAGGAAAAATCACTGGCTTTGGTACCAATTCAAAAGCCTGGTGATGCTTCTAGCTATTCGAATGCAGTGGTCAAGTCAGAGCGATTAAAACGCGGTTGGTTGCTACTGCGCCAGGTATTTCTTCCAAAAAGGCAAAAGCAGAAATCTTCGGTGAAAAATACCCCTTCTTTTCAACGGGCATCAGAACGACACAACTCTTCTTCTGTAGTCCATCTCAACCGGAAACAGAATATTGATCCTAATGGCGATTGCAACCTAGATGCAGAGACTGGTGCCATTGTGCCATATGAATCAGATGATATTGTTACTCCTTCCCCACTTTTTAGTGATTCCAGTGTAACTCCTGAAGAATTGTTGGCCTTACAAGAGAAATACTCATCTTCCTGCAAACTGTATAGTTTCCATGATCTTGTATCCGCAACGGCAAACTTCTCGAGTGAAAATTTGGTTGGAGTAGGTGGTTGTAGTCATGTTTACAGAGGATGTATTGCAGAGGGCAAGGAATTGGCAATAAAAATTTTAAAGCCATCTGAAAATGCGATAAAGGATTTTGTTAAGGAAATTGAGATCATCACAACCTTGCATCATAAGAACATAATATCTCTATCTGGATTTTGTGTTCACGGCAATAATTTAATACTGGTTTATGATCTTTTATCAAGGGGAAGCTTAGAAAAAAACCTCTATGGCAACAAGAATGATTGCAGTACATTTGGGTGGCAAGAGAGGTACAAGGTGGCTGTGGGTGTAGCTGAGGCATTGAACCATCTGCATAATGGATCTACACATCCTGTGATTCATAGGGATGTGAAATCTTCCAATATCCTTCTTTCAGATGATTTTGAGCCTCGGCTATCGGATTTCGGACTCGCTAGTTGGGGTTCTTCTCCATCCCATACAAGTACTGATGTAGCTGGAACTTTTGGATACCTAGCTCCTGAGTATTTTATGCATGGCAAAGTGACTGACAAAATTGATGTATATGCTTTTGGTGTTGTACTTCTTGAGCTTCTCACAAGTAAGAAGCCAATTAATAATGTATGTCCTAAGGTCCAACAGAGCCTTGTTACGTGGGCAACACCAATTTTGAAGGAAGGGAAGCTTTCTCAGTTGCTTGATCCAAGTCTAGGTAGTGATTATGACAATTGTTACATTCATAGAATGGTTCTAGCTGCTACTCTTTGCATCAGACGATCTTTTAGATGGCGGCCTCATATCAGCATTATATTGAAGCTCCTACAAGGTGTTGAAGAAGTGACAAGATGGGCAGAACAAGAGGTTAATGCATCAGAGGAGCTTGACAGATTGGATGGGGAACCAGTTTCAATTGATATTCAGTCGCATCTAAGCCTTGCTTTGCTGGACATAGAGGATGATACAGATTCAATTAGTAGCACTGAGCAGTTTATCTCAACCGAAGACTATTTTAGGGGAAGATGTAGTCGCTCGTCAAGTTTTGCCTAG 2226 0.4335 MTGPGHNATAARGRNLLVGVKLDPWCRELLTWTLIKVAEPGDVVIALHAVLSENAASMLSLVKAFDSVLDVYQGFCRLKQVELKLKVCRGTSARKLLVQEAESLGADTLILGTSQSFRSLPSSTAVAKYCAKKLPKCVSIFAVDSGKVTFLREAAVMPSDQVKLFRSKSLVNNPKRSQKSNECCVRLLVLPDSSTTTHKEGLTDSSRQENSLALVPIQNPDDASSYLIPVVKSDYSEPDSSATLLKGRLNDSHGQEKSLALVPIQKPGDASSYSNAVVKSERLKRGWLLLRQVFLPKRQKQKSSVKNTPSFQRASERHNSSSVVHLNRKQNIDPNGDCNLDAETGAIVPYESDDIVTPSPLFSDSSVTPEELLALQEKYSSSCKLYSFHDLVSATANFSSENLVGVGGCSHVYRGCIAEGKELAIKILKPSENAIKDFVKEIEIITTLHHKNIISLSGFCVHGNNLILVYDLLSRGSLEKNLYGNKNDCSTFGWQERYKVAVGVAEALNHLHNGSTHPVIHRDVKSSNILLSDDFEPRLSDFGLASWGSSPSHTSTDVAGTFGYLAPEYFMHGKVTDKIDVYAFGVVLLELLTSKKPINNVCPKVQQSLVTWATPILKEGKLSQLLDPSLGSDYDNCYIHRMVLAATLCIRRSFRWRPHISIILKLLQGVEEVTRWAEQEVNASEELDRLDGEPVSIDIQSHLSLALLDIEDDTDSISSTEQFISTEDYFRGRCSRSSSFA 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60666g00009 741 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 14 114 - -
Stsc60666g00009 741 ProSiteProfiles Protein kinase domain profile. 398 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60666g00009 741 MobiDBLite consensus disorder prediction 299 323 - -
Stsc60666g00009 741 Gene3D Phosphorylase Kinase; domain 1 365 472 - -
Stsc60666g00009 741 SUPERFAMILY Protein kinase-like (PK-like) 379 676 IPR011009 -
Stsc60666g00009 741 CDD USP_Like 15 138 - -
Stsc60666g00009 741 PANTHER OS08G0249100 PROTEIN 208 687 IPR046958 -
Stsc60666g00009 741 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 367 472 - -
Stsc60666g00009 741 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 13 144 - -
Stsc60666g00009 741 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Stsc60666g00009 741 Gene3D Transferase(Phosphotransferase) domain 1 473 691 - -
Stsc60666g00009 741 Pfam Protein kinase domain 400 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60666g00009 741 SMART serkin_6 398 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60666g00009 741 FunFam Putative receptor-like serine/threonine-protein kinase 473 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60666g00009 Stsc-Chr60666 41460 45032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60666g00009 386 674 Trihelix Transcription Factor Family AT5G38560 40.268 1.58e-68 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc60666g00009 Pkinase 6.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60666g00009 - - gmx:100815722 821.617