Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60664g00008 ATGGGTCGTGAAACCCTCCTCCTTCCACCACCACCACCACCATCCACCACCACCCCAACAACCACACTCTTAGCCCCACCACCGCCGCCACTACCATCACTCACACAACCAGGACAATCACCACCATCTGCACCTTCTCCTTCTTCTGCTATTGTTGCTGCTACTACTGCTGTGGCTACTGCAGTTGCTGCTCCTCCTACCTCTCTTGCTCCCGGTTTCAGGTTCCACCCCACTGATGAGGAGCTCGTTATCTATTACCTCAAGCGCAAGGTTTCTGGCAAAACCTTCCGATTTGATGCAATTTCCGAGGTTGACATCTACAGAAGCGAACCCTGGGACCTTGCAGATAAGTCGAGGTTGAAGACTAGGGACCAGGAATGGTACTTCTTTAGTGCCCTGGACAAGAAGTATGGCAATGGTGGGAGGATGAACAGGGCTACAAGCAAAGGGTACTGGAAAGCCACGGGGAATGATCGTCCGGTTAAGCACGAACAACGGACCGTGGGGTTGAAGAAAACGCTGGTGTTCCATAGTGGAAGAGCCCCAGATGGTAAGAGGACTAATTGGGTCATGCATGAGTACCGACTCGTCGACGAAGAGCTCGAGAGGGCTAGGTCTGGATCCTCTCAGCCTCAGGATGCATATGTTTTGTGTAGAGTTTTTCACAAAAATAACATAGGACCTCCGAATGGGCAACGTTATGCACCTTTCGTTGAAGAGGAGTGGGATGATGCATCGGGATTGGTTCCTGGGGCAGAACCTGCGGAGGATGTTACCGTCACTGTTGCCCATCCTCTACGCATTGAAGGCAACAGTCGCACTTTATGCGACAGGAGGAATAACATTGCACAGGATACTCAATCTAACAACAAAGTTCCATTTGATGTGAACAAGCTTCCTATTGAGACTCAGAGTCTGCTAGCTGTCTGCAAAAGGGAGAGTATGGCGGAGTTTCCATCTCCCGAAAAGGAGGATAACTCAAAGCGTCGAATCGATGAGTATCCTTCGCCGCAAACAGAAAATACCAAGCCTATCTCCCAAATATACAAGAGGAGGAGGCATTATTTGAATGTGAACCACTCAAATGGAGATTCAGTCCGAACCAACCAAGAACCGCCATGCTCATCAACAATAACCACTGCTGCGACTGCACTCCCGATGGCAACCCCCGCAGCCAACACCAAGATCACCAGCGTTGCACCTAAGAAGCATTTCTTGTCTGCACTGGTGGAGTTTTCCTTGATGGAATCCCTCGAATCAAAGGGAAATCCATCCGTTCAACCACCAGAGTTTGATGATGCTTCCTTGGAGGCATCCGTGCCGCCAAATTGCGTTAAGTTCATCAAACACATGCAGGGTGAGATTTACAAGCTTTCCGAGGAGAGGGAGACTATGAGGTTCGAGATGATGAGCGCACAAGCGATGATTAACATGCTCGAGTCGCGCATCGAACATTTGAGCAAAGAGAATGAGGAACTGAAGAGCATGATGAGCAACAATCCTTAG 1506 0.4967 MGRETLLLPPPPPPSTTTPTTTLLAPPPPPLPSLTQPGQSPPSAPSPSSAIVAATTAVATAVAAPPTSLAPGFRFHPTDEELVIYYLKRKVSGKTFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVKHEQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELERARSGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFVEEEWDDASGLVPGAEPAEDVTVTVAHPLRIEGNSRTLCDRRNNIAQDTQSNNKVPFDVNKLPIETQSLLAVCKRESMAEFPSPEKEDNSKRRIDEYPSPQTENTKPISQIYKRRRHYLNVNHSNGDSVRTNQEPPCSSTITTAATALPMATPAANTKITSVAPKKHFLSALVEFSLMESLESKGNPSVQPPEFDDASLEASVPPNCVKFIKHMQGEIYKLSEERETMRFEMMSAQAMINMLESRIEHLSKENEELKSMMSNNP 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60664g00008 501 ProSiteProfiles NAC domain profile. 69 223 IPR003441 GO:0003677|GO:0006355
Stsc60664g00008 501 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 68 338 - -
Stsc60664g00008 501 MobiDBLite consensus disorder prediction 1 49 - -
Stsc60664g00008 501 Gene3D NAC domain 78 226 IPR036093 GO:0003677|GO:0006355
Stsc60664g00008 501 MobiDBLite consensus disorder prediction 1 44 - -
Stsc60664g00008 501 MobiDBLite consensus disorder prediction 316 336 - -
Stsc60664g00008 501 Coils Coil 469 496 - -
Stsc60664g00008 501 SUPERFAMILY NAC domain 59 224 IPR036093 GO:0003677|GO:0006355
Stsc60664g00008 501 MobiDBLite consensus disorder prediction 315 344 - -
Stsc60664g00008 501 FunFam Nac domain-containing protein 86 78 226 - -
Stsc60664g00008 501 Pfam No apical meristem (NAM) protein 71 196 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60664g00008 Stsc-Chr60664 54914 60366 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60664g00008 40 494 NAC Transcription Factor Family AT3G10480 42.987 1.18e-112 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc60664g00008 NAM 3.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60664g00008 - - adu:107466647 824.698