Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60663g00008 ATGATCCCCAATTTCCTCATTTCAAGGTTAGCTTCTTCCTTTAAAACCCTAAACCTCAACAACAACCCCAAACCCCTATTCAATCTTCTTCAAAACCACAAATCCCACCCCCTTTTCTTCAATTCACTCGCAACCCAAGACACCCAACGCCGAAAAGATTCCAACTTTACAATCTCCTACCTAATCGCCACGTGCGGTTTCTCCCCCGAAACCGCGGCACAGTTGTCACAAAAAGTCCGTTTCCAAAACCCTGAAAAGCCAAACGCGGTCTTAGCCCTCCTCAGAAAGTATGGATTCTCCGAAACGCAGATTTCTAAGTACATTCAGAAGCGACCCATGTTGCTCCTCACCAATGCCAAAAAGACCATTTTGCCCAAGCTCATGTTTTTCTCCTCCATTGGGATTCCACGCGAAGACCTCCCAAAGCTAGTGATTAAGAACCAAGGCCTGTTAGTGAGGAGCTTGGAGAAGTGCCTGATTCCTCGCTATGAGGTCCTCAAGAGCGTTGTTCGCAGTGAGCATGAGGTTGTTTATTCCTTGAAGCGTGGTGCAATGGCTTTTGCTATGTGTGATGTCATCAAGAATTTGGTTCCCAACACACAGGTTTTGAGAGATTTGGGTGTGCCTCAGAGTTCAATCTCAATGTTGGTTATGTTTCACCCGAGTGAGGCCTTCATGAATCATGCAAAGTTTGTTAAAGGTGTGAACTTGGCAAAGGAAATGGGGTTTGATCCTAGCAAGTCCAATTTCATCAGTGCCGTACATGTGCTTTTGCATATGGATTCGGAGAACATGGAGATGAAAATGAAGTCTTTGGAGAAATGGGGTTGGTCAAAGGAGGTGTCCCTTTTGTCATTTAGGAAGTTCCCTACTTTTATGTCGTATTCGCAGGAGAGGATCGGCCGGGCGATGAGATTCTTGGTGGAGGATATGGGTTGGACTGCCGAGGACATTGCGAGGTACCCCACAACTCTAGGATACAGCTTGGAGAAGAGGGTTATCCCTAGGTGCCATGTGATTAAGGTCTTGAAATCGAAAGGACTCGTTAAAGATCAGCTATGCTTGCCGACGTTCATGTGTGCGAAAGAGGAAGAGTTTTTGGAGGACTATGTGACCAAGTATCTTGAGCAGGTGCCTCTTCTATCTAAGGTATATCAAGGTTTGGTTGATTATAAGGATTTAATTTAG 1188 0.4545 MIPNFLISRLASSFKTLNLNNNPKPLFNLLQNHKSHPLFFNSLATQDTQRRKDSNFTISYLIATCGFSPETAAQLSQKVRFQNPEKPNAVLALLRKYGFSETQISKYIQKRPMLLLTNAKKTILPKLMFFSSIGIPREDLPKLVIKNQGLLVRSLEKCLIPRYEVLKSVVRSEHEVVYSLKRGAMAFAMCDVIKNLVPNTQVLRDLGVPQSSISMLVMFHPSEAFMNHAKFVKGVNLAKEMGFDPSKSNFISAVHVLLHMDSENMEMKMKSLEKWGWSKEVSLLSFRKFPTFMSYSQERIGRAMRFLVEDMGWTAEDIARYPTTLGYSLEKRVIPRCHVIKVLKSKGLVKDQLCLPTFMCAKEEEFLEDYVTKYLEQVPLLSKVYQGLVDYKDLI 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60663g00008 395 Gene3D Transcription termination factor 3, mitochondrial 182 379 IPR038538 -
Stsc60663g00008 395 SMART mt_12 283 314 IPR003690 GO:0003690|GO:0006355
Stsc60663g00008 395 SMART mt_12 248 278 IPR003690 GO:0003690|GO:0006355
Stsc60663g00008 395 SMART mt_12 141 172 IPR003690 GO:0003690|GO:0006355
Stsc60663g00008 395 SMART mt_12 105 136 IPR003690 GO:0003690|GO:0006355
Stsc60663g00008 395 SMART mt_12 184 209 IPR003690 GO:0003690|GO:0006355
Stsc60663g00008 395 SMART mt_12 315 349 IPR003690 GO:0003690|GO:0006355
Stsc60663g00008 395 PANTHER CGI-12 PROTEIN-RELATED 54 374 IPR003690 GO:0003690|GO:0006355
Stsc60663g00008 395 FunFam Mitochondrial transcription termination factor-like 155 378 - -
Stsc60663g00008 395 Pfam mTERF 256 366 IPR003690 GO:0003690|GO:0006355
Stsc60663g00008 395 Pfam mTERF 91 244 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60663g00008 Stsc-Chr60663 44623 45810 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc60663g00008 mTERF 5.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60663g00008 K15031 - gmx:100786641 352.058