Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60661g00014 ATGGCATTGTGTAACAAGCTTGGAAATTTATTGAGACAGCGTGCTCCCCGAAGCGGTTCATCCATGCTCAATTATATTCGCTGCATGTCCTCAAGCAGGCTTTTCATTGGGGGCCTTTCATATGGAGTTGATGACCAGAGTCTTAGGGATGCATTCTCCAGCTTTGGCGACGTGGTTGATGCAAGGGTGGTCACTGATAGAGACACCGGAAGATCAAGAGGTTTTGGATTTGTTAACTTCTCAAGCGACGAGTCTGCTGGCTCAGCTCTCTCTGCAATGGACGGGCAGGATCTAAATGGCCGAGTGATTAGGGTGAGCTATGCAAATGATAGGCCACCTCGAGGTGGTGGCGGTGGTTTTGGTGGTGGTGGTGGTGGTTATGGTGGTGGTGGTGGTTACGGGGGAGGTGGTTACCGTAGAGGTGGAGGTGGTGGTTATGGTGATCCATCTTTTTAG 456 0.5066 MALCNKLGNLLRQRAPRSGSSMLNYIRCMSSSRLFIGGLSYGVDDQSLRDAFSSFGDVVDARVVTDRDTGRSRGFGFVNFSSDESAGSALSAMDGQDLNGRVIRVSYANDRPPRGGGGGFGGGGGGYGGGGGYGGGGYRRGGGGGYGDPSF 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60661g00014 151 SUPERFAMILY RNA-binding domain, RBD 29 142 IPR035979 GO:0003676
Stsc60661g00014 151 SMART rrm1_1 33 106 IPR000504 GO:0003723
Stsc60661g00014 151 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 104 IPR000504 GO:0003723
Stsc60661g00014 151 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 29 148 - -
Stsc60661g00014 151 FunFam Glycine-rich RNA-binding protein 2 21 145 - -
Stsc60661g00014 151 Gene3D - 25 148 IPR012677 -
Stsc60661g00014 151 MobiDBLite consensus disorder prediction 131 151 - -
Stsc60661g00014 151 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 110 IPR000504 GO:0003723
Stsc60661g00014 151 CDD RRM2_NsCP33_like 33 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60661g00014 Stsc-Chr60661 62319 65264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60661g00014 32 114 Eukaryotic Initiation Factors Gene Family AT4G34110 28.916 1.73e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60661g00014 - - gmx:100527220 179.104