Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60661g00005 ATGTTTCGACTCAATATATTTTCGAGTTGGCTGATATTTCTCAGTGTATTAAGACATAGTCATCCAATCACAGATCCCGACGTCGAAGGGGAAGCACTGATTGAATTTCTGAGAGCCCTCAATGATTCAAATAATCAAATTAAAGACTGGAATAGTTTTTTTGTGAGCCCATGCTATAGTTGGTCTAATGTCACTTGTAGCAACAAACATGTTATATCTCTGAACTTGGCATCAAAAGGATTTTCTGGAACGCTTTCTCCATCAATTGCCAAATTGAAATACTTGGTTAGCTTGGAGTTGCAGGACAACAATCTTGCAGGCCCTTTACCCGAGTACATCGCCAACTTAACGCGCCTCGAATATCTGAATCTCGCTGACAACAATTTCAACAGTTCTGTACCGGCTACTTGGGGCCGACTTTCGAGTCTAAAGCATCTGTTGTTGAAAGGGAATGATTTATCTGGTCATATTCCAGAAACAATTGCAAACCTTACTGGATTGGCAGAATTGGATCTTTCATCTAATGGTCTTACTGGAACTATCCCAATGCCACTCTTTTCAATTCCAATATTTAATTTTTCGAACACACTTCTTCGTTGCGGCTCTAGCTTGGATCAGCCTTGTGCTTCTAAACCTTCACTTCCTGGTTCAACCAACAAATCAAAACTTGCAATGGTTGTTGGTTTCGCAAGTTGTAGTTTATTTGCACTCATAAGTCTTGGGGTTTTCTTGGTATATAGATACCATCGCATGCACAGACAGAAAACTGATGTCTTTTATGATGTTTCAGGTGAAGATGAGAGCCAAATTTCCTTTTGGCAACTAAGAAGATTTTCGTTACGCGAACTCCAACATGCGACTACAAATTTCAGCAAAAGCAATGTAATTGGCCAAGGAGGCTTTGGAAAAGTTTACAAGGGAGTACTCTCAGATGGCACAAAAGTGGCCGTGAAACGCCTCGCGGATTATCAGGCTCCTGGTGGAGAAGCTGCATTCCAAAGAGAAGTTCAACTTATAAGTGTTGCAGTTCATAAGAATCTGCTAAGATTAATTGGATACTGCACAACCTCAACTGAAAGAATCCTTGTGTACCCTTTCATGGAAAATAGAAGTGTAGCATATCAATTGAGAGATTTAAAAGCAGGTGAGAAAGGTTTAGATTGGGAAATGAGGAAAAATGTGGCATTTGGCACAGCACATGGATTAGATTATCTACATAATCAATGCAACCCTAAGATAATTCACCGTGATTTGAAAGCTGCAAATATCTTATTAGATGATAACTTTGAAGCTGTTCTTGGAGACTTCGGTCTAGCTAAACTTGTTGATACAAGGGTGACTCATGTTACTACTCAAGTGAGAGGCACAATGGGTCATATAGCACCAGAATACTTGTGCACTGGAAAATCATCAGAGAAGACTGATGTGTTTGGGTATGGTATAACACTTCTCGAATTAGTCACCGGTCAACGCGCCGTTGACTTATTTCGGCTTCAAGAGGAAGAGGAGGATGTTCTTCTGCTTGATCATGTAATGTCTGAAACTCTGAATCATACCTAA 1560 0.4006 MFRLNIFSSWLIFLSVLRHSHPITDPDVEGEALIEFLRALNDSNNQIKDWNSFFVSPCYSWSNVTCSNKHVISLNLASKGFSGTLSPSIAKLKYLVSLELQDNNLAGPLPEYIANLTRLEYLNLADNNFNSSVPATWGRLSSLKHLLLKGNDLSGHIPETIANLTGLAELDLSSNGLTGTIPMPLFSIPIFNFSNTLLRCGSSLDQPCASKPSLPGSTNKSKLAMVVGFASCSLFALISLGVFLVYRYHRMHRQKTDVFYDVSGEDESQISFWQLRRFSLRELQHATTNFSKSNVIGQGGFGKVYKGVLSDGTKVAVKRLADYQAPGGEAAFQREVQLISVAVHKNLLRLIGYCTTSTERILVYPFMENRSVAYQLRDLKAGEKGLDWEMRKNVAFGTAHGLDYLHNQCNPKIIHRDLKAANILLDDNFEAVLGDFGLAKLVDTRVTHVTTQVRGTMGHIAPEYLCTGKSSEKTDVFGYGITLLELVTGQRAVDLFRLQEEEEDVLLLDHVMSETLNHT 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60661g00005 519 FunFam Leucine-rich repeat receptor-like protein kinase 26 183 - -
Stsc60661g00005 519 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 497 - -
Stsc60661g00005 519 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Stsc60661g00005 519 Gene3D Transferase(Phosphotransferase) domain 1 367 518 - -
Stsc60661g00005 519 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515
Stsc60661g00005 519 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Stsc60661g00005 519 ProSiteProfiles Protein kinase domain profile. 290 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60661g00005 519 Pfam Protein kinase domain 291 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60661g00005 519 SUPERFAMILY Protein kinase-like (PK-like) 268 501 IPR011009 -
Stsc60661g00005 519 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Stsc60661g00005 519 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Stsc60661g00005 519 Gene3D Ribonuclease Inhibitor 26 210 IPR032675 -
Stsc60661g00005 519 SMART serkin_6 290 513 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60661g00005 519 SUPERFAMILY L domain-like 30 198 - -
Stsc60661g00005 519 FunFam Somatic embryogenesis receptor kinase 1 259 366 - -
Stsc60661g00005 519 FunFam Os07g0541700 protein 367 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60661g00005 Stsc-Chr60661 19115 22737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60661g00005 26 511 Receptor kinase-like Gene Family AT5G10290 57.172 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc60661g00005 Pkinase 2.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60661g00005 - - jre:108996276 738.413