Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60661g00004 ATGCCACTCTTTTCAATTCCAATATTTAATTTTTCGAACACACTTCTTCGTTGCGGCTCTAGCTTGGATCAGCCTTGTGCTTCTAAACCTTCACTTCCTGGTTCAACCAACAAATCAAAACTTGCAATGGTTGTTGGTTTCGCAAGTTGTAGTTTATTTGCACTCATAAGTCTTGGGGTTTTCTTGGTATATAGATACCATCGCATGCACAGACAGAAAACTGATGTCTTTTATGATGTTTCAGGTGAAGATGAGAGCCAAATTTCCTTTTGGCAACTAAGAAGATTTTCGTTACGCGAACTCCAACATGCGACTACAAATTTCAGCAAAAGCAATGTAATTGGCCAAGGAGGCTTTGGAAAAGTTTACAAGGGAGTACTCTCAGATGGCACAAAAGTGGCCGTGAAACGCCTCGCGGATTATCAGGCTCCTGGTGGAGAAGCTGCATTCCAAAGAGAAGTTCAACTTATAAGTGTTGCAGTTCATAAGAATCTGCTAAGATTAATTGGATACTGCACAACCTCAACTGAAAGAATCCTTGTGTACCCTTTCATGGAAAATAGAAGTGTAGCATATCAATTGAGAGATTTAAAAGCAGGTGAGAAAGGTTTAGATTGGGAAATGAGGAAAAATGTGGCATTTGGCACAGCACATGGATTAGATTATCTACATAATCAATGCAACCCTAAGATAATTCACCGTGATTTGAAAGCTGCAAATATCTTATTAGATGATAACTTTGAAGCTGTTCTTGGAGACTTCGGTCTAGCTAAACTTGTTGATACAAGGGTGACTCATGTTACTACTCAAGTGAGAGGCACAATGGGTCATATAGCACCAGAATACTTGTGCACTGGAAAATCATCAGAGAAGACTGATGTGTTTGGGTATGGTATAACACTTCTCGAATTAGTCACCGGTCAACGCGCCGTTGACTTATTTCGGCTTCAAGAGGAAGAGGAGGATGTTCTTCTGCTTGATCATATAAAGAAGCTATTGAAGGAAGACAGGTTGAAGGACATAGTAGATAGAAACCTAGAGACATATGATGAAAAGGAAGTAGAGAGAATAATTCATGTTGCATTGGTTTGCACAAGAAACTACCCAGAGGAGCGTCCATCAATGTCAGAGATAGTGAAAATGCTTCAAGGGGTTGGTTTGCAAGAGAGATGGAACGAATTGGAGCAACATAGTAATGAAGAAGAGAGAAAATGCATGCATTGTGGTTTCTGA 1233 0.399 MPLFSIPIFNFSNTLLRCGSSLDQPCASKPSLPGSTNKSKLAMVVGFASCSLFALISLGVFLVYRYHRMHRQKTDVFYDVSGEDESQISFWQLRRFSLRELQHATTNFSKSNVIGQGGFGKVYKGVLSDGTKVAVKRLADYQAPGGEAAFQREVQLISVAVHKNLLRLIGYCTTSTERILVYPFMENRSVAYQLRDLKAGEKGLDWEMRKNVAFGTAHGLDYLHNQCNPKIIHRDLKAANILLDDNFEAVLGDFGLAKLVDTRVTHVTTQVRGTMGHIAPEYLCTGKSSEKTDVFGYGITLLELVTGQRAVDLFRLQEEEEDVLLLDHIKKLLKEDRLKDIVDRNLETYDEKEVERIIHVALVCTRNYPEERPSMSEIVKMLQGVGLQERWNELEQHSNEEERKCMHCGF 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60661g00004 410 ProSiteProfiles Protein kinase domain profile. 108 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60661g00004 410 Pfam Protein kinase domain 109 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60661g00004 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Stsc60661g00004 410 Gene3D Transferase(Phosphotransferase) domain 1 185 401 - -
Stsc60661g00004 410 FunFam Somatic embryogenesis receptor kinase 1 77 184 - -
Stsc60661g00004 410 FunFam Somatic embryogenesis receptor-like kinase 1 185 402 - -
Stsc60661g00004 410 SMART serkin_6 108 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60661g00004 410 ProSitePatterns Protein kinases ATP-binding region signature. 114 136 IPR017441 GO:0005524
Stsc60661g00004 410 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 26 384 - -
Stsc60661g00004 410 SUPERFAMILY Protein kinase-like (PK-like) 86 383 IPR011009 -
Stsc60661g00004 410 Gene3D Phosphorylase Kinase; domain 1 77 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60661g00004 Stsc-Chr60661 16578 21413 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60661g00004 3 395 Receptor kinase-like Gene Family AT5G10290 62.785 1.34e-175 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc60661g00004 Pkinase 8.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60661g00004 - - gmx:100800886 610.527