Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60661g00003 ATGTTTCGACTCAATATATTTTCGAGTTGGCTGATATTTCTCAGTGTATTAAGACATAGTCATCCAATCACAGATCCCGACGTCGAAGGGGAAGCACTGATTGAATTTCTGAGAGCCCTCAATGATTCAAATAATCAAATTAAAGACTGGAATAGTTTTTTTGTGAGCCCATGCTATAGTTGGTCTAATGTCACTTGTAGCAACAAACATGTTATATCTCTGAACTTGGCATCAAAAGGATTTTCTGGAACGCTTTCTCCATCAATTGCCAAATTGAAATACTTGGTTAGCTTGGAGTTGCAGGACAACAATCTTGCAGGCCCTTTACCCGAGTACATCGCCAACTTAACGCGCCTCGAATATCTGAATCTCGCTGACAACAATTTCAACAGTTCTGTACCGGCTACTTGGGGCCGACTTTCGAGTCTAAAGCATCTGTTGTTGAAAGGGAATGATTTATCTGGTCATATTCCAGAAACAATTGCAAACCTTACTGGATTGGCAGAATTGGATCTTTCATCTAATGGTCTTACTGGAACTATCCCAATGCCACTCTTTTCAATTCCAATATTTAATTTTTCGAACACACTTCTTCGTTGCGGCTCTAGCTTGGATCAGCCTTGTGCTTCTAAACCTTCACTTCCTGGTTCAACCAACAAATCAAAACTTGCAATGGTTGTTGGTTTCGCAAGTTGTAGTTTATTTGCACTCATAAGTCTTGGGGTTTTCTTGGTATATAGATACCATCGCATGCACAGACAGAAAACTGATGTCTTTTATGATGTTTCAGGTGAAGATGAGAGCCAAATTTCCTTTTGGCAACTAAGAAGATTTTCGTTACGCGAACTCCAACATGCGACTACAAATTTCAGCAAAAGCAATGTAATTGGCCAAGGAGGCTTTGGAAAAGTTTACAAGGGAGTACTCTCAGATGGCACAAAAGTGGCCGTGAAACGCCTCGCGGATTATCAGGCTCCTGGTGGAGAAGCTGCATTCCAAAGAGAAGTTCAACTTATAAGTGTTGCAGTTCATAAGAATCTGCTAAGATTAATTGGATACTGCACAACCTCAACTGAAAGAATCCTTGTGTACCCTTTCATGGAAAATAGAAGTGTAGCATATCAATTGAGAGATTTAAAAGCAGGTGAGAAAGGTTTAGATTGGGAAATGAGGAAAAATGTGGCATTTGGCACAGCACATGGATTAGATTATCTACATAATCAATGCAACCCTAAGATAATTCACCGTGATTTGAAAGCTGCAAATATCTTATTAGATGATAACTTTGAAGCTGTTCTTGGAGACTTCGGTCTAGCTAAACTTGTTGATACAAGGGTGACTCATGTTACTACTCAAGTGAGAGGCACAATGGGTCATATAGCACCAGAATACTTGTGCACTGGAAAATCATCAGAGAAGACTGATGTGTTTGGGTATGGTATAACACTTCTCGAATTAGTCACCGGTCAACGCGCCGTTGACTTATTTCGGCTTCAAGAGGAAGAGGAGGATGTTCTTCTGCTTGATCATATAAAGAAGCTATTGAAGGAAGACAGGTTGAAGGACATAGTAGATAGAAACCTAGAGACATATGATGAAAAGGAAGTAGAGAGAATAATTCATGTTGCATTGGTTTGCACAAGAAACTACCCAGAGGAGCGTCCATCAATGTCAGAGATAGTGAAAATGCTTCAAGGGGTTGGTTTGCAAGAGAGATGGAACGAATTGGAGCAACATAGTAATGAAGAAGAGGTTAGTAATCAACTCATGTCTCACCAGTTTGTTTGGACTGCTGAATATTCAACCTTTGATCAAGAAGCTATAAGGCTTTCAGAAGCAAGATAA 1845 0.3989 MFRLNIFSSWLIFLSVLRHSHPITDPDVEGEALIEFLRALNDSNNQIKDWNSFFVSPCYSWSNVTCSNKHVISLNLASKGFSGTLSPSIAKLKYLVSLELQDNNLAGPLPEYIANLTRLEYLNLADNNFNSSVPATWGRLSSLKHLLLKGNDLSGHIPETIANLTGLAELDLSSNGLTGTIPMPLFSIPIFNFSNTLLRCGSSLDQPCASKPSLPGSTNKSKLAMVVGFASCSLFALISLGVFLVYRYHRMHRQKTDVFYDVSGEDESQISFWQLRRFSLRELQHATTNFSKSNVIGQGGFGKVYKGVLSDGTKVAVKRLADYQAPGGEAAFQREVQLISVAVHKNLLRLIGYCTTSTERILVYPFMENRSVAYQLRDLKAGEKGLDWEMRKNVAFGTAHGLDYLHNQCNPKIIHRDLKAANILLDDNFEAVLGDFGLAKLVDTRVTHVTTQVRGTMGHIAPEYLCTGKSSEKTDVFGYGITLLELVTGQRAVDLFRLQEEEEDVLLLDHIKKLLKEDRLKDIVDRNLETYDEKEVERIIHVALVCTRNYPEERPSMSEIVKMLQGVGLQERWNELEQHSNEEEVSNQLMSHQFVWTAEYSTFDQEAIRLSEAR 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60661g00003 614 FunFam Somatic embryogenesis receptor kinase 1 259 366 - -
Stsc60661g00003 614 SUPERFAMILY L domain-like 30 198 - -
Stsc60661g00003 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Stsc60661g00003 614 SMART serkin_6 290 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60661g00003 614 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Stsc60661g00003 614 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Stsc60661g00003 614 ProSiteProfiles Protein kinase domain profile. 290 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60661g00003 614 Pfam Protein kinase domain 291 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc60661g00003 614 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Stsc60661g00003 614 FunFam Somatic embryogenesis receptor-like kinase 1 367 584 - -
Stsc60661g00003 614 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515
Stsc60661g00003 614 Gene3D Ribonuclease Inhibitor 26 210 IPR032675 -
Stsc60661g00003 614 SUPERFAMILY Protein kinase-like (PK-like) 268 565 IPR011009 -
Stsc60661g00003 614 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 574 - -
Stsc60661g00003 614 FunFam Leucine-rich repeat receptor-like protein kinase 26 183 - -
Stsc60661g00003 614 Gene3D Transferase(Phosphotransferase) domain 1 367 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60661g00003 Stsc-Chr60661 16578 22737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60661g00003 26 608 Receptor kinase-like Gene Family AT5G65240 55.877 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Stsc60661g00003 Pkinase 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60661g00003 - - gmx:100800886 855.514