Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc60660g00012 ATGGCACTTTCTATGCACAAGGACGCCTCCAATAGCATGGATTCAAGCAAGTACGTTAGGTACACACCTGAACAAGTTGAGGCTTTGGAAAGGGTCTATGCTGAATGTCCAAAGCCTTCTTCCATGAGGAGACAGCAACTCATCAGAGAGTGCCCAATCCTCTCAAACATTGAGCCTAAACAGATCAAAGTCTGGTTTCAGAACCGAAGATGCCGTGAGAAACAAAGGAAAGAAGCCTCTCGTCTGCAGACAGTGAATAGAAAGCTGACTGCAATGAACAAGCTGTTGATGGAGGAGAATGACCGGTTGCAGAAGCAGGTCTCACATTTGGTCTATGAAAATGGATACATGAAGCAACAAATTCATACTGCATCTGCTACTACTACCACAGACAATAGCTGTGAGTCTGTTGTGATGAGCGGTCAGAACCAACAACAGCAAAACCCAACACCTCAGCATCCTCAAAGGGATGCTAACAACCCAGCTGGTCTTCTCGCCATAGCTGAGGAGACCCTGGCAGAGTTCCTTTCTAAGGCTACTGGAACTGCTGTCGACTGGGTCCAGATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTGTTGCCGAGATTCTCAAAGATCGACCATCATGGTACCGCGACTGTCGGTGCCTTGATGTGTTGAGCATTGTTCCTACAGGGAGCGGGGGCACTATAGAGCTCATATATATGCAGACTTATGCGCCAACTACTTTGGCTGCAGCACGTGACTTCTGGACACTAAGATACACTACTAGTTTGGAAGATGGAAGTCTTGTGATTTGTGAGAGATCATTGACATCTTCGACTGGTGGTCCTACGGGTCCTCCTCCTTCAAACTTTGTAAGAGCTGAGATGCTTCCCAGTGGTTATCTAATTAGACCCTGTGAGGGTGGTGGATCCATTATTCACATTGTTGATCATGTTGATTTAGATGTCTGGAGTGTTCCTGAAGTACTGAGGCCTCTTTATGAATCTTCAAAAATCTTGGCACAGAAATTGACCATTGCTGCCCTTCAACATATAAGACAGATTGCACAAGAATCTAGTGGAGAAATTCAGTGTGGTGGGGGGCGCCAGCCTGCTGTTTTAAGGACATTTAGCCAGAGACTCTGCAGGGGGTTCAATGATGCTGTTAATGGGTTTGTGGATGATGGTTGGTCACTGTTGGGAAATGATGGAGTAGAAGATGTGACTATAGCTATAAACTCATCTCCCAACAAATTTTTGGGGTCCCATTACAATTCATCAATGTTCCCAGCTTTTGGAGGTGGAGTTCTGTGTGCCAAGGCATCCATGCTGTTGCAGAATGTTCCTCCAGCTTTGCTTGTTCGATTCTTGAGGGAGCATCGGTCTGAGTGGGCTGATTATGGTGTTGATGCATACTCCGCCGCATGTCTTAAGGCTACTCCCTATGCTGTTCCTTGTGCAAGACCTGGTGGTTTCCCCAGCACCCAGGTCATTTTACCCCTTGCTCATACTATTGAGCATGAGGAGTTCTTGGAGGTAGTTCGGATAGAGGGTCATGCATTTTCCCCTGAAGATGTAGGATTGGCACGTGATATGTATTTACTGCAGCTTTGCAGTGGGGTTGATGAAAATGCAATTGGGGCTTGTGCTCAATTGGTATTTGCACCTATTGATGAATCATTTGCTGATGATGCTCTTCTACTACCTTCTGGATTCCGTGTCATACCATTGGATCCTAAAACAGCTGCCCCAGCCACAACAAGGACATTAGATTTGGCATCTACACTTGAAGTAGGATCCGGGAATGCACGTGCAGCTGGTGAAGCTGATGGTTACAATCTTAGGTCAGTCCTTACCATTGCATTCCAATTCACCTTTGAGAACCATTTGCGCGACAGTGTAGCTGCTATGGCTCGCCAGTATGTGCGTAGTGTTGTGGGGTCTGTCCAGAGGGTTGCAATGGCAATCGCTCCGTCTCGGGTTGGTACTCAACTGGGGCCAAAGTCTCTCCCTGGTTCACCAGAGGCTCTTACTTTGGCTAGATGGATCAGCCGAAGCTACAGAATCCACACTGGTTCAGACCTTTTTAGGGTTGAGTCAACTGCTGGTGATGCAATCTTGAAGCAACTTTGGCAACATTCTGATGCAATCATGTGCTGTTCTGTGAAAACAAATGCATCCCCGGTGTTCACCTTTGCGAACCAAGCCGGACTGGACATGCTCGAAACTACTCTTGTCGCCCTTCAAGACATCATGCTTGACAAAGTTCTTGATGAATCTGGGAGGAAGTTTCTTTGTTCTGAGTTCTCCAAGATTATGCAACAGGGTTTTGCATATCTGCCAGCAGGAATATGTGCATCAAGCATGAACAGGCCAGTGTCCTATGACCAAGCCATTGCATGGAAAGTTCTCAATGATGATGATTCCAATCACTGCTTGGCCTTCATGTTTATGAACTGGTCCTTTGTCTAA 2469 0.4662 MALSMHKDASNSMDSSKYVRYTPEQVEALERVYAECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYMKQQIHTASATTTTDNSCESVVMSGQNQQQQNPTPQHPQRDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVAEILKDRPSWYRDCRCLDVLSIVPTGSGGTIELIYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPTGPPPSNFVRAEMLPSGYLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYESSKILAQKLTIAALQHIRQIAQESSGEIQCGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLLGNDGVEDVTIAINSSPNKFLGSHYNSSMFPAFGGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKATPYAVPCARPGGFPSTQVILPLAHTIEHEEFLEVVRIEGHAFSPEDVGLARDMYLLQLCSGVDENAIGACAQLVFAPIDESFADDALLLPSGFRVIPLDPKTAAPATTRTLDLASTLEVGSGNARAAGEADGYNLRSVLTIAFQFTFENHLRDSVAAMARQYVRSVVGSVQRVAMAIAPSRVGTQLGPKSLPGSPEALTLARWISRSYRIHTGSDLFRVESTAGDAILKQLWQHSDAIMCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLDKVLDESGRKFLCSEFSKIMQQGFAYLPAGICASSMNRPVSYDQAIAWKVLNDDDSNHCLAFMFMNWSFV 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc60660g00012 822 SUPERFAMILY Bet v1-like 392 579 - -
Stsc60660g00012 822 SUPERFAMILY Homeodomain-like 17 79 IPR009057 -
Stsc60660g00012 822 MobiDBLite consensus disorder prediction 132 157 - -
Stsc60660g00012 822 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Stsc60660g00012 822 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 13 822 IPR044830 GO:0003700
Stsc60660g00012 822 Gene3D - 8 83 - -
Stsc60660g00012 822 SMART START_1 166 354 IPR002913 GO:0008289
Stsc60660g00012 822 SUPERFAMILY Bet v1-like 167 356 - -
Stsc60660g00012 822 CDD homeodomain 17 77 IPR001356 GO:0003677
Stsc60660g00012 822 Pfam START domain 204 352 IPR002913 GO:0008289
Stsc60660g00012 822 ProSiteProfiles START domain profile. 211 336 IPR002913 GO:0008289
Stsc60660g00012 822 Coils Coil 86 106 - -
Stsc60660g00012 822 Gene3D - 192 361 IPR023393 -
Stsc60660g00012 822 MobiDBLite consensus disorder prediction 132 159 - -
Stsc60660g00012 822 Pfam MEKHLA domain 677 821 IPR013978 -
Stsc60660g00012 822 CDD bZIP 69 108 - -
Stsc60660g00012 822 SMART HOX_1 14 80 IPR001356 GO:0003677
Stsc60660g00012 822 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Stsc60660g00012 822 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc60660g00012 Stsc-Chr60660 56871 62193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc60660g00012 1 822 Homeobox Transcription Factor Family AT2G34710 78.246 0.0 1353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc60660g00012 START 4.7e-38 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc60660g00012 K09338 - gmx:100807428 1514.59